PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022988015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | MYB | ||||||||
Protein Properties | Length: 1027aa MW: 115103 Da PI: 4.8496 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43 | 1e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_022988015.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.7 | 1.7e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_022988015.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1027 aa Download sequence |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRHR KRKRKGIDYN AEIPFEKRPP PGFFDVSGED RPVEQPKFPA 240 TIEELEGKRR IDVEAQLRKQ DIAKNKIAQR QDAPSAVLQA NKLNDPEMVR KRSKLMLPAP 300 QISDHELEEI AKMGYAGDLL AGNEELAEGS GATRALLANY AQTPRQGMTP FRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP RKKEIQTPNP MLTPSATPGG 420 VGLTPRSGMT PARDAYSFGM TPKGTPIRDE LHINEDMDAH DSAKLESQRQ ADLRRNLSLG 480 LGNLPQPKNE YQVVMQPIPE DKEEPEEMIE EDMSDRIARE RAEEEARQQA LLRKRSKVLQ 540 RELPRPPTAS LELIRNSLIA DGDKSSFVPR TPIEQADEMV RKELLALLEH DNAKYPIDEK 600 VNKEKKKGSK RSGNRPTAAI PTIDDFEVTE MEEADYLINE EARYLCVAMG HEKESLDEFV 660 EAHKTCLNDL MYFPTRNAYG LSSVAGNHEK LAALQDEFEY VKMKMDDDTE KAVRLEKKVK 720 VLTHGYETRS KQSLWPQIEA TFKQIDTAAT ELECFVALQK QEMSAASHRI SGISEEVQKQ 780 KELERTLQLR YGNLLAELEK MQKIMDDRKA LAQKEEEIAA ESRALQLAEA EAEANQSVGE 840 KADNSYESMS ASAVVNCENS MPVTSAPNEL TGEQLNLSVR HEHGTSNAMD IDAEKESAVV 900 SSDIGLTDDK LPSAVEENAS LPDNGFEDSD KSRTIDVPSQ ELLGPHANGS PDSITAENKI 960 SNESVDGAAI QNVECSTNNV EEVEDVETQQ LNTEAENSEF HLTNLDSSAA PASSNEDGPR 1020 NEGEATE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 205 | KRRELKAAGIDTRHRKRKRK |
2 | 200 | 205 | RKRKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | MYB family protein |