PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022987959.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 999aa MW: 113089 Da PI: 6.5274 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.6e-14 | 436 | 480 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + WT++Ed++l av+ +G g+W ++a+t+ gRt+ qc +rw k XP_022987959.1 436 KSEWTKDEDDKLRSAVAIFGEGDWQAVASTLE-GRTGPQCSNRWKK 480 578*****************************.***********98 PP | |||||||
2 | Myb_DNA-binding | 34.9 | 3.6e-11 | 489 | 534 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T++Ed +l+ av ++G+++W++ a+ ++ gR qc++rw++ XP_022987959.1 489 RGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLP-GRNQVQCRERWFNC 534 799*****************************.***********996 PP | |||||||
3 | Myb_DNA-binding | 39.5 | 1.3e-12 | 541 | 580 | 1 | 42 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 r WT+eEd++l a++++G W+++a++++ Rt+++c+ XP_022987959.1 541 RCEWTEEEDLRLEIAIQEHGYS-WAKVAACVP-SRTDNECRR 580 568*****************99.*********.*******95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 999 aa Download sequence |
MSRRSHVDGG DKELPASEED DEDDLVDDDM ETLRRACRLA GVNHEDYVNP QLSLPAAGDA 60 NLGSDSDDVD DLELLRNIQN RFSIAADEQP LSILPPVTAD EEEDDFETLR SIQRRFAAYE 120 SDILSNKPDQ SCDLDGPLKM DSDNTNVERL TSSERSSMVA FEKGSLPKAA LAFIDAIKKN 180 RSQQKFLRSK MIHLEARIEE NKKLRKRFKV LKGFQGSCRR KTTCALSQMV DPRVQLISAG 240 KPQQAKDSSK KDKRLSAMCY GPAENSHVAC YRIALTKFHP VDRKRWSNFE RENLGKGIRQ 300 QFQEMVLQIS VDQISEIQGF SAESDDLDNI LASIKDLDIT PEKIREFLPK VNWDKLASMY 360 LRGRSGAECE ARWLNFEDPL INRNPWTTSE DKNLLFTIQQ KGLNNWIDLA VSLGTNRTPF 420 QWLSRYQRSL NASILKSEWT KDEDDKLRSA VAIFGEGDWQ AVASTLEGRT GPQCSNRWKK 480 SLDPARTKRG YFTPDEDSRL KIAVLLFGPK NWNKKAEFLP GRNQVQCRER WFNCLDPSLR 540 RCEWTEEEDL RLEIAIQEHG YSWAKVAACV PSRTDNECRR WKKLFPNQVP LLQEARKIQK 600 VALISNFVDR ESERPALGPT DFRPVPNSHL LCNTDDPETA PKRNVRTRRM PVSRNEKSAN 660 GDAPKKRKSN NQRNRVDETA QVDFASNTSS VPEVKSTKPQ RKRTRHGAYT TRRKGAPKIG 720 CNSERCAEQN SDTRNLEVQL NCKEPAERIN SDCPETVDEN GMEVFENKAA EMHSEGVVCF 780 SEQEENQNST GSSGVSVLSE MTNDMDEYNP STLPDTTLLA SITADDIIET KGVNVADKDL 840 DGSNSFSLPQ SCLELRTTDS EGVDSYSVDE FTDKSHVVCK PQGRRKKNSK RSNKSQDSLV 900 SCQQAELEMS GTNELHRCNQ LKKRKHSSTN TSPLGTMEAV EEVDDCTLLG FLQKRLKRTT 960 TTHGKKVDGS SSTSPEVDND DNDPTLALLL KEKLKRKKH |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 884 | 925 | RRKKNSKRSNKSQDSLVSCQQAELEMSGTNELHRCNQLKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18100.1 | 0.0 | MYB family protein |