PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022987958.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 1000aa MW: 113246 Da PI: 6.6308

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022987958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.6	1.6e-14	436	480	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + WT++Ed++l av+ +G g+W ++a+t+ gRt+ qc +rw k XP_022987958.1 436 KSEWTKDEDDKLRSAVAIFGEGDWQAVASTLE-GRTGPQCSNRWKK 480 578***************************.*********98 PP
2	Myb_DNA-binding	34.9	3.6e-11	489	534	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T++Ed +l+ av ++G+++W++ a+ ++ gR qc++rw++ XP_022987958.1 489 RGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLP-GRNQVQCRERWFNC 534 799***************************.*********996 PP
3	Myb_DNA-binding	48.7	1.7e-15	541	585	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r WT+eEd++l a++++G W+++a++++ Rt+++c+ rw k+ XP_022987958.1 541 RCEWTEEEDLRLEIAIQEHGYS-WAKVAACVP-SRTDNECRRRWKKL 585 568***************99.*****.*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1000 aa Download sequence
MSRRSHVDGG DKELPASEED DEDDLVDDDM ETLRRACRLA GVNHEDYVNP QLSLPAAGDA 60 NLGSDSDDVD DLELLRNIQN RFSIAADEQP LSILPPVTAD EEEDDFETLR SIQRRFAAYE 120 SDILSNKPDQ SCDLDGPLKM DSDNTNVERL TSSERSSMVA FEKGSLPKAA LAFIDAIKKN 180 RSQQKFLRSK MIHLEARIEE NKKLRKRFKV LKGFQGSCRR KTTCALSQMV DPRVQLISAG 240 KPQQAKDSSK KDKRLSAMCY GPAENSHVAC YRIALTKFHP VDRKRWSNFE RENLGKGIRQ 300 QFQEMVLQIS VDQISEIQGF SAESDDLDNI LASIKDLDIT PEKIREFLPK VNWDKLASMY 360 LRGRSGAECE ARWLNFEDPL INRNPWTTSE DKNLLFTIQQ KGLNNWIDLA VSLGTNRTPF 420 QWLSRYQRSL NASILKSEWT KDEDDKLRSA VAIFGEGDWQ AVASTLEGRT GPQCSNRWKK 480 SLDPARTKRG YFTPDEDSRL KIAVLLFGPK NWNKKAEFLP GRNQVQCRER WFNCLDPSLR 540 RCEWTEEEDL RLEIAIQEHG YSWAKVAACV PSRTDNECRR RWKKLFPNQV PLLQEARKIQ 600 KVALISNFVD RESERPALGP TDFRPVPNSH LLCNTDDPET APKRNVRTRR MPVSRNEKSA 660 NGDAPKKRKS NNQRNRVDET AQVDFASNTS SVPEVKSTKP QRKRTRHGAY TTRRKGAPKI 720 GCNSERCAEQ NSDTRNLEVQ LNCKEPAERI NSDCPETVDE NGMEVFENKA AEMHSEGVVC 780 FSEQEENQNS TGSSGVSVLS EMTNDMDEYN PSTLPDTTLL ASITADDIIE TKGVNVADKD 840 LDGSNSFSLP QSCLELRTTD SEGVDSYSVD EFTDKSHVVC KPQGRRKKNS KRSNKSQDSL 900 VSCQQAELEM SGTNELHRCN QLKKRKHSST NTSPLGTMEA VEEVDDCTLL GFLQKRLKRT 960 TTTHGKKVDG SSSTSPEVDN DDNDPTLALL LKEKLKRKKH

Sequence ? help Back to Top

Protein Sequence Length: 1000 aa Download sequence

MSRRSHVDGG DKELPASEED DEDDLVDDDM ETLRRACRLA GVNHEDYVNP QLSLPAAGDA  60
NLGSDSDDVD DLELLRNIQN RFSIAADEQP LSILPPVTAD EEEDDFETLR SIQRRFAAYE  120
SDILSNKPDQ SCDLDGPLKM DSDNTNVERL TSSERSSMVA FEKGSLPKAA LAFIDAIKKN  180
RSQQKFLRSK MIHLEARIEE NKKLRKRFKV LKGFQGSCRR KTTCALSQMV DPRVQLISAG  240
KPQQAKDSSK KDKRLSAMCY GPAENSHVAC YRIALTKFHP VDRKRWSNFE RENLGKGIRQ  300
QFQEMVLQIS VDQISEIQGF SAESDDLDNI LASIKDLDIT PEKIREFLPK VNWDKLASMY  360
LRGRSGAECE ARWLNFEDPL INRNPWTTSE DKNLLFTIQQ KGLNNWIDLA VSLGTNRTPF  420
QWLSRYQRSL NASILKSEWT KDEDDKLRSA VAIFGEGDWQ AVASTLEGRT GPQCSNRWKK  480
SLDPARTKRG YFTPDEDSRL KIAVLLFGPK NWNKKAEFLP GRNQVQCRER WFNCLDPSLR  540
RCEWTEEEDL RLEIAIQEHG YSWAKVAACV PSRTDNECRR RWKKLFPNQV PLLQEARKIQ  600
KVALISNFVD RESERPALGP TDFRPVPNSH LLCNTDDPET APKRNVRTRR MPVSRNEKSA  660
NGDAPKKRKS NNQRNRVDET AQVDFASNTS SVPEVKSTKP QRKRTRHGAY TTRRKGAPKI  720
GCNSERCAEQ NSDTRNLEVQ LNCKEPAERI NSDCPETVDE NGMEVFENKA AEMHSEGVVC  780
FSEQEENQNS TGSSGVSVLS EMTNDMDEYN PSTLPDTTLL ASITADDIIE TKGVNVADKD  840
LDGSNSFSLP QSCLELRTTD SEGVDSYSVD EFTDKSHVVC KPQGRRKKNS KRSNKSQDSL  900
VSCQQAELEM SGTNELHRCN QLKKRKHSST NTSPLGTMEA VEEVDDCTLL GFLQKRLKRT  960
TTTHGKKVDG SSSTSPEVDN DDNDPTLALL LKEKLKRKKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	885	926	RRKKNSKRSNKSQDSLVSCQQAELEMSGTNELHRCNQLKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein