PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022987355.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 366aa MW: 42812.7 Da PI: 5.6816

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022987355.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.2	6.8e-08	22	64	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +r+C+ + k++++fC ++ +lC+ C ++ H+ H++ XP_022987355.1 22 ARVCDACLCKRAHWFCAADDAFLCQACDVSVHSAnqlarrHDR 64 689*****************************65677777776 PP
2	CCT	69	1.2e-23	318	361	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk++ XP_022987355.1 318 REARVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRMKGRFVKRT 361 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MLRSERKAAA EAAATMMGGR TARVCDACLC KRAHWFCAAD DAFLCQACDV SVHSANQLAR 60 RHDRIRLETA SLKSTHQGQA QSQPHLPPWL KGFTRKARTP RPNKQISSTK ASVFSLVPEI 120 SNDEGFSIDD NEDEHRQFHH HHQQVPVFDP LFDNEKFSLT HELDDFGDGF LPSEVDLAEF 180 VADVESLLVR QEQEQEQEQE QEEQYDRTTI VKVKDEEEEE ELVQDWNFKG EEIEEEEINK 240 VEDEVKVFEQ ELKVKKKIKK KNIFLRLNYD AIITAWDTRS SPYTTGDRPE FDLDDCWEEE 300 WGVHENGEKG GWRNDGEREA RVSRYREKRR TRLFSKKIRY QVRKLNAEKR PRMKGRFVKR 360 TPTPSC

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MLRSERKAAA EAAATMMGGR TARVCDACLC KRAHWFCAAD DAFLCQACDV SVHSANQLAR  60
RHDRIRLETA SLKSTHQGQA QSQPHLPPWL KGFTRKARTP RPNKQISSTK ASVFSLVPEI  120
SNDEGFSIDD NEDEHRQFHH HHQQVPVFDP LFDNEKFSLT HELDDFGDGF LPSEVDLAEF  180
VADVESLLVR QEQEQEQEQE QEEQYDRTTI VKVKDEEEEE ELVQDWNFKG EEIEEEEINK  240
VEDEVKVFEQ ELKVKKKIKK KNIFLRLNYD AIITAWDTRS SPYTTGDRPE FDLDDCWEEE  300
WGVHENGEKG GWRNDGEREA RVSRYREKRR TRLFSKKIRY QVRKLNAEKR PRMKGRFVKR  360
TPTPSC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	329	345	RRTRLFSKKIRYQVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-35	CO-like family protein