PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022986583.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family M-type_MADS
Protein Properties Length: 279aa    MW: 31329.9 Da    PI: 9.7606
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022986583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.27.8e-221461249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    + e ks +qvtfskRr+g++ KA ELSvLC+ae+a+++ s ++kly++
  XP_022986583.1 14 KLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYTF 61
                    57899******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MKKSLGRRKI EIKKLEKKSS QQVTFSKRRA GLFNKAAELS VLCGAEIAIL VSSASNKLYT  60
FGHPNVESLL DRFLAGNSAP PKPAEAYLPL QELNRDFDDV AAEFDIEKRR AAERLSNDRF  120
WWDEPLESMK IDELKRFRSS LVELRGKVAE RVEKFTAMRK EGSPIPALQP STPPSITLVG  180
NLQRPPTTPS IDLVENVQRP PTPPSIGLFE NLQWPSTPPS IGLFENLRWP STPPSIDLVK  240
SLQWSPMPSI HLAENDQCLP SSFHISGNHS VARRLNMLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-28M-type_MADS family protein