PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022986315.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 411aa MW: 45389.4 Da PI: 4.5258

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022986315.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.8	1.4e-05	2	34	3	35
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 e+ C+ ++ ++++ +C++++ lC C H+ XP_022986315.1 2 EPQCEFCGVEKAIVYCKSDSARLCLHCDYIVHS 34 689***999**************998885 PP
2	zf-B_box	19.4	2.2e-06	47	72	5	30
zf-B_box 5 kCpeHeekelqlfCedCqqllCedCl 30 C++++ ++++l C d+++ lC+ C XP_022986315.1 47 LCDKCNAHPAILRCMDDKVSLCQGCD 72 7************************6 PP
3	CCT	62.8	1.1e-21	355	398	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ XP_022986315.1 355 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 398 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MEPQCEFCGV EKAIVYCKSD SARLCLHCDY IVHSANSLSR RHLRSLLCDK CNAHPAILRC 60 MDDKVSLCQG CDWSADDCSS LPQRTHLLHS YTGSPSTSEF SRICTSLLDS TSCNTAFDAT 120 ADWTSLTTPY VIADSIDLTD VEAPSAAENL NDVQTCSKFE TWIADPASAS PENPSYQPDF 180 LSDDSNLPKD AETNENNDIC ESLNLGDVSL HLENGEGLFD SPKDAMKFEF DAGELECLLI 240 DRNFPVTESN VPVEDTIEAS DYTGFQSAEV DISMNMIRNG NSNCTLINPS CKGNFNIGFP 300 TAQVHSSISV SLSNITGESS GADYQECGLS PAFLTETSWD PSMEAIGPLA KDRNRDKAKM 360 RYNEKKKTRT FGKQIRYASR KARADTRKRV KGRFVKAGEA YDYDPLVTRN F

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MEPQCEFCGV EKAIVYCKSD SARLCLHCDY IVHSANSLSR RHLRSLLCDK CNAHPAILRC  60
MDDKVSLCQG CDWSADDCSS LPQRTHLLHS YTGSPSTSEF SRICTSLLDS TSCNTAFDAT  120
ADWTSLTTPY VIADSIDLTD VEAPSAAENL NDVQTCSKFE TWIADPASAS PENPSYQPDF  180
LSDDSNLPKD AETNENNDIC ESLNLGDVSL HLENGEGLFD SPKDAMKFEF DAGELECLLI  240
DRNFPVTESN VPVEDTIEAS DYTGFQSAEV DISMNMIRNG NSNCTLINPS CKGNFNIGFP  300
TAQVHSSISV SLSNITGESS GADYQECGLS PAFLTETSWD PSMEAIGPLA KDRNRDKAKM  360
RYNEKKKTRT FGKQIRYASR KARADTRKRV KGRFVKAGEA YDYDPLVTRN F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	5e-78	CO-like family protein