PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022985967.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 436aa    MW: 47700.3 Da    PI: 7.5261
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022985967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.25.6e-134772126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C +++rtG C+yG++C+F+H+
  XP_022985967.1 47 PGEPDCLYYMRTGSCSYGSNCRFNHP 72
                    5789*********************9 PP

2zf-CCCH36.11.1e-1191115327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tGtCkyG++Ck++H++
  XP_022985967.1  91 QPDCEYFLKTGTCKYGGSCKYHHPR 115
                     789********************96 PP

3zf-CCCH37.24.9e-12138160527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++++rtG Ck+G +CkF+H++
  XP_022985967.1 138 SCPYYLRTGSCKFGVSCKFNHPQ 160
                     6********************97 PP

4zf-CCCH39.87.6e-13278303227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+f+ +GtCkyG+ CkF+H++
  XP_022985967.1 278 DQPECRYFMNNGTCKYGSDCKFHHPK 303
                     689*********************96 PP

5zf-CCCH33.85.6e-11321345226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C+++  +G CkyG++CkF H+
  XP_022985967.1 321 GQAVCSYYNMYGLCKYGPSCKFDHP 345
                     7899********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    
MPDNLQVQRN AVPNQSPDIS EALWRLEISD NQDGGDAAES SPYPDRPGEP DCLYYMRTGS  60
CSYGSNCRFN HPVFVAQGAM YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA  120
GPVRFNILGL PMRQEEKSCP YYLRTGSCKF GVSCKFNHPQ PSPVGNMLHP ARPGALGSAG  180
TPFMPASGVP YTGAVPAWSL PRVQYMPGPC VQGQQSFVPV LVSPSQGAIT AQDWNTYVGN  240
VSPVLPNLGY NSINFEEPYS NGQLASSTAI PTLPDRPDQP ECRYFMNNGT CKYGSDCKFH  300
HPKQRIAQSA TNPLGLPSRP GQAVCSYYNM YGLCKYGPSC KFDHPSATYP YNYGFTLPVL  360
DSSFMKYPSN NFTMSSHEAL PQTVSKSSEW VQKADPSNNK RRTTNSKVVV DSTAEEATTV  420
SCSLPGGSET LQDQSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-109C3H family protein