PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022985967.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 436aa MW: 47700.3 Da PI: 7.5261 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.2 | 5.6e-13 | 47 | 72 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C+yG++C+F+H+ XP_022985967.1 47 PGEPDCLYYMRTGSCSYGSNCRFNHP 72 5789*********************9 PP | |||||||
2 | zf-CCCH | 36.1 | 1.1e-11 | 91 | 115 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_022985967.1 91 QPDCEYFLKTGTCKYGGSCKYHHPR 115 789********************96 PP | |||||||
3 | zf-CCCH | 37.2 | 4.9e-12 | 138 | 160 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G +CkF+H++ XP_022985967.1 138 SCPYYLRTGSCKFGVSCKFNHPQ 160 6********************97 PP | |||||||
4 | zf-CCCH | 39.8 | 7.6e-13 | 278 | 303 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ CkF+H++ XP_022985967.1 278 DQPECRYFMNNGTCKYGSDCKFHHPK 303 689*********************96 PP | |||||||
5 | zf-CCCH | 33.8 | 5.6e-11 | 321 | 345 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+++ +G CkyG++CkF H+ XP_022985967.1 321 GQAVCSYYNMYGLCKYGPSCKFDHP 345 7899********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence |
MPDNLQVQRN AVPNQSPDIS EALWRLEISD NQDGGDAAES SPYPDRPGEP DCLYYMRTGS 60 CSYGSNCRFN HPVFVAQGAM YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA 120 GPVRFNILGL PMRQEEKSCP YYLRTGSCKF GVSCKFNHPQ PSPVGNMLHP ARPGALGSAG 180 TPFMPASGVP YTGAVPAWSL PRVQYMPGPC VQGQQSFVPV LVSPSQGAIT AQDWNTYVGN 240 VSPVLPNLGY NSINFEEPYS NGQLASSTAI PTLPDRPDQP ECRYFMNNGT CKYGSDCKFH 300 HPKQRIAQSA TNPLGLPSRP GQAVCSYYNM YGLCKYGPSC KFDHPSATYP YNYGFTLPVL 360 DSSFMKYPSN NFTMSSHEAL PQTVSKSSEW VQKADPSNNK RRTTNSKVVV DSTAEEATTV 420 SCSLPGGSET LQDQSG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-109 | C3H family protein |