PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022985548.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 676aa MW: 74344.4 Da PI: 8.3266

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022985548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.2	1.5e-23	112	213	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD++vF +++ XP_022985548.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAMDVHGVVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL--RSK 202 89**************************997556555..8********************************************..447 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + l+v+++r+ XP_022985548.1 203 HGDLCVGIRRA 213 8888**996 PP
2	Auxin_resp	114.5	9.6e-38	282	365	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++FevvY+Prast+eF+vk+++v++a++++++ GmRfkm fetedss++++ +Gt ++v+ +dp+rWpnS+Wr+L+ XP_022985548.1 282 AAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWfMGTTSSVQVADPIRWPNSPWRLLQ 365 678899****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MKEAEKSLDP QLWHACAGGM VQMPAINSKV FYFPQGHAEH AQATVDFTSS LRIPPLILCR 60 VLAVKFLADP ETDEVFANVS LVPLANNDLN FEEEGGFGGN GSDNNMEKPA SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYTADPPVQ TVIAMDVHGV VWKFRHIYRG TPRRHLLTTG 180 WSSFVNQKKL VAGDSIVFLR SKHGDLCVGI RRAKRAIGCA ADHPYGWNPG GGNCFPPCGG 240 LTMFLRDEDN NKLSRKGSVS SSGGGGNLRG KGKVRPESVI EAAALAASGQ PFEVVYYPRA 300 STPEFCVKAS SVRAAMRIQW CSGMRFKMPF ETEDSSRISW FMGTTSSVQV ADPIRWPNSP 360 WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPVIQLSPFS SPRKKFRLPQ IPDIPLDSQF 420 PLSSSSSSFS SNTLRPSSPM CCLSDNTSVG IQGARHTHFG ISLSDFHLNN KLQLGLVPSS 480 FQQLHFHSRI SNTDHTRSSS ALLNGEKTGP KLERSDSVKK KHQFLLFGQP ILTEQQICCS 540 SSSDIHQVSP NKSDTELGLD IGHCKVFMES EDVGRTLNLS VISSYEELYR RLAYMFGMEK 600 PDILSHVLYQ DATGAVKQAG DKPFSDFIKT ARRLTILTDE SGSDKMGRRT LMDGVLSGEN 660 GRLDASNKTG PLSILA

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MKEAEKSLDP QLWHACAGGM VQMPAINSKV FYFPQGHAEH AQATVDFTSS LRIPPLILCR  60
VLAVKFLADP ETDEVFANVS LVPLANNDLN FEEEGGFGGN GSDNNMEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYTADPPVQ TVIAMDVHGV VWKFRHIYRG TPRRHLLTTG  180
WSSFVNQKKL VAGDSIVFLR SKHGDLCVGI RRAKRAIGCA ADHPYGWNPG GGNCFPPCGG  240
LTMFLRDEDN NKLSRKGSVS SSGGGGNLRG KGKVRPESVI EAAALAASGQ PFEVVYYPRA  300
STPEFCVKAS SVRAAMRIQW CSGMRFKMPF ETEDSSRISW FMGTTSSVQV ADPIRWPNSP  360
WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPVIQLSPFS SPRKKFRLPQ IPDIPLDSQF  420
PLSSSSSSFS SNTLRPSSPM CCLSDNTSVG IQGARHTHFG ISLSDFHLNN KLQLGLVPSS  480
FQQLHFHSRI SNTDHTRSSS ALLNGEKTGP KLERSDSVKK KHQFLLFGQP ILTEQQICCS  540
SSSDIHQVSP NKSDTELGLD IGHCKVFMES EDVGRTLNLS VISSYEELYR RLAYMFGMEK  600
PDILSHVLYQ DATGAVKQAG DKPFSDFIKT ARRLTILTDE SGSDKMGRRT LMDGVLSGEN  660
GRLDASNKTG PLSILA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28350.1	0.0	ARF family protein