PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022985132.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 266aa    MW: 29626 Da    PI: 4.8669
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022985132.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.53.1e-27958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvt+skRrng++KKA+ELSvLCd+++a+i+fs++ +l  +s
  XP_022985132.1  9 KRIENNTNRQVTYSKRRNGLIKKAYELSVLCDIDIALIMFSPSSRLSHFS 58
                    79********************************************9997 PP
2K-box16.82.9e-07109178877
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 
                       ++++ e+lqqe+a L+ e++  ++++R +  +  +  s  e+++ e++L + l +i ++K+++l +++
  XP_022985132.1 109 TSSNSNVEELQQEVATLRHELQLAEQQLRLFEPDPFSFTSNGEIESCEKNLLDTLARIAQRKKDVLNSHL 178
                     368899***********************************************************98876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MGRVKLQIKR IENNTNRQVT YSKRRNGLIK KAYELSVLCD IDIALIMFSP SSRLSHFSGR  60
RRIEDVLARY INLPDHDRGS VVQNKEFLLG TLNNLKTEND IALQLANPTS SNSNVEELQQ  120
EVATLRHELQ LAEQQLRLFE PDPFSFTSNG EIESCEKNLL DTLARIAQRK KDVLNSHLSP  180
YDPPNGIQLY LDSQDGIASS FENDVANWLP ENGGQNQNQI CVAAESSSIP QSGQYPGTVY  240
DQVTQAGNMN VGSCNIGGCD MGNPND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.15e-86MIKC_MADS family protein