PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022984571.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 784aa MW: 92098.6 Da PI: 7.0951

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022984571.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.2e-06	230	249	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC+++H XP_022984571.1 230 CPFHLKTGACRFGQRCSRIH 249 *******************9 PP
2	zf-CCCH	25.3	2.7e-08	359	386	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C f++t tC++G C+F+H+ XP_022984571.1 359 WKIAICGEFMKTRyqTCSHGTACNFIHC 386 7889***********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence
MKEPEFVGEE EEKPQGTEAG PLEKPCSLEN LCRKEKRKAL KKIKRKQLRK EEALKKLQEE 60 EVRLNDPEEK RRIRLMELEE EERSERERKL FEERERAWLE AMELKKKKMA EEEEEEQRRR 120 ALEEESTARQ AENENELNEE DGWEYIEGPA EVIWKGEEII LKKKLIKIPK KGVEPEKSLE 180 DAHRPTSNPL PPQSEDFTDC KNAPISTRQV IDDVASQVPN FGTEQDKSHC PFHLKTGACR 240 FGQRCSRIHF YPDKSCTLLI KNMYNGPGLA WEQDEGLEFA DEEVECCYEE FYEDVHTEFL 300 KYGEIVNFKV CKNGSFHLRG NLYVHYKSLD SAVLAYNANN GRFYAGKQVI CEFVNVTRWK 360 IAICGEFMKT RYQTCSHGTA CNFIHCFRNP GGDYEWADSD KPPPRYWVKK MASLFGYLDE 420 SENEKHTELE HWDKFGKSSR SMSTDVNRYH SRRSKSRSLD HGSRRSKNSE NDYRRHSRRE 480 KVHEKQQSLD KEEYEQANLK YYHRRNNRFN DANSDESADT FDERSKDRER GRRSRVRNAD 540 HDDSKNKSNE TDEGWSSGDG NKYGHRHQRR KCNGHVSETF KTTGGSPSQS AISDHDTRGI 600 SSDRNKERRV SYGGKPKKRW DEVTKDSDDQ LKQKSKLKTD YESKKFSLRK SSSLLSDGRQ 660 EQSISDRYVE RSEPMNLGKE YCNNEHIDKE GRWDPGRSYD EFEKCSESTS TMRSEAGSPV 720 CQGERFKSDV LDRVDYYGNK VKKRNHRELK SSDSYEQRTS RRKSSRPDDD QNFSDLKYDN 780 TNTD

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence

MKEPEFVGEE EEKPQGTEAG PLEKPCSLEN LCRKEKRKAL KKIKRKQLRK EEALKKLQEE  60
EVRLNDPEEK RRIRLMELEE EERSERERKL FEERERAWLE AMELKKKKMA EEEEEEQRRR  120
ALEEESTARQ AENENELNEE DGWEYIEGPA EVIWKGEEII LKKKLIKIPK KGVEPEKSLE  180
DAHRPTSNPL PPQSEDFTDC KNAPISTRQV IDDVASQVPN FGTEQDKSHC PFHLKTGACR  240
FGQRCSRIHF YPDKSCTLLI KNMYNGPGLA WEQDEGLEFA DEEVECCYEE FYEDVHTEFL  300
KYGEIVNFKV CKNGSFHLRG NLYVHYKSLD SAVLAYNANN GRFYAGKQVI CEFVNVTRWK  360
IAICGEFMKT RYQTCSHGTA CNFIHCFRNP GGDYEWADSD KPPPRYWVKK MASLFGYLDE  420
SENEKHTELE HWDKFGKSSR SMSTDVNRYH SRRSKSRSLD HGSRRSKNSE NDYRRHSRRE  480
KVHEKQQSLD KEEYEQANLK YYHRRNNRFN DANSDESADT FDERSKDRER GRRSRVRNAD  540
HDDSKNKSNE TDEGWSSGDG NKYGHRHQRR KCNGHVSETF KTTGGSPSQS AISDHDTRGI  600
SSDRNKERRV SYGGKPKKRW DEVTKDSDDQ LKQKSKLKTD YESKKFSLRK SSSLLSDGRQ  660
EQSISDRYVE RSEPMNLGKE YCNNEHIDKE GRWDPGRSYD EFEKCSESTS TMRSEAGSPV  720
CQGERFKSDV LDRVDYYGNK VKKRNHRELK SSDSYEQRTS RRKSSRPDDD QNFSDLKYDN  780
TNTD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-132	C3H family protein