PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022983085.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 243aa MW: 27530.9 Da PI: 7.5619 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 67 | 119 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++++eqle Le+ F+++ +++ +++++L+k+lgL+ rq+ vWFqNrRa++k XP_022983085.1 67 KKRLSSEQLESLERSFQEEIKLDPNRKQKLSKELGLQPRQIAVWFQNRRARWK 119 55699***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119 | 2.5e-38 | 66 | 157 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kk+rls+eq+++LE+sF+ee kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++da+++e+++L++ev +Lr+ l+e XP_022983085.1 66 KKKRLSSEQLESLERSFQEEIKLDPNRKQKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVIKLRSMLRE 157 9**************************************************************************************99876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence |
MEWATGSFRP FLSRPPESSF GFLYNYNLEQ YQGIDVKHSA MAGTSETVLQ GLVPGMDMNS 60 YGNLDKKKRL SSEQLESLER SFQEEIKLDP NRKQKLSKEL GLQPRQIAVW FQNRRARWKA 120 KQLEHLYDTL KQEFDAISRE KHKLQEEVIK LRSMLRELQA ARNQVSTVYT DLSGEETVES 180 TSVGAGCSSK PRAVATAAAA AAAAAANQYP TPPEQCNYVF NTEEYNPMSP TFWGSLPPTY 240 HPQ |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 66 | 95 | KKKRLSSEQLESLERSFQEEIKLDPNRKQK |
2 | 114 | 122 | RRARWKAKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03790.1 | 3e-40 | HD-ZIP family protein |