PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022983050.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 295aa    MW: 31156 Da    PI: 9.2659
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022983050.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.2e-07100125227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C+ +     Ck+Gd+C+FaHg+
  XP_022983050.1 100 KTRMCNKYNSAEGCKFGDKCHFAHGE 125
                     899*******99************96 PP
2zf-CCCH31.72.6e-10262286126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC++f + G C +G+rC+FaHg
  XP_022983050.1 262 YKTKLCDNFGK-GSCTFGERCHFAHG 286
                     9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MDYRKRGKSE VGLNANAGFK KSKQELEYLS TGVASKSKPC TKFYSTTGCQ FGEGCHFLHY  60
VPGGYNAVAQ MMNLEPAPPA PRSIAAPHPL SNGSTTQDAK TRMCNKYNSA EGCKFGDKCH  120
FAHGEWELGR PSAPSHEDPR DTGYFPSRLP SRMNAAPAGP AASFGASATA KISVDASLAG  180
AIIGKGGVNS KQICRQTGAK LSIRDHESDP NLRNIELEGT FDQIKEASAM VRDLIATVSM  240
AGPPKAATRA TGGPAATAGS NYKTKLCDNF GKGSCTFGER CHFAHGSAEL RKSGA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-54C3H family protein