PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022982672.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 726aa MW: 79758.5 Da PI: 6.9304

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022982672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	5.7e-07	302	322	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_022982672.1 302 PCPDFRK-GACRHGDMCEYAHG 322 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence
MCGGPEKSNS ASTTSARLPN PKDMNHLTVD CEDSFYSLLE LASDNDAEGL KSMMESDLFS 60 LNKSGLWYVR QKGSKQVVNE HRTPLMVAAT YGCVDVLKLI LSYPEVDVNL SSGTDKSTAL 120 HCATSSGSVN AVDIVDLLLS AGADPKTKDV NGDRPVDVIF VHPKLQKQNT RFRLEELLNN 180 HSSGSLDVSC LHLSLKMPDS ESPPLSSSLE DEFRSTPKSI SSPKFTDGFA NSTKEKKEYP 240 IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 300 VPCPDFRKGA CRHGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTNEELRP 360 LYVSTGSAVP SPRSIGSAPT VMDMATALGL LPGSPSSVSA LSPSPFTQAM SPSSNGVCHS 420 SVNWQQPNVP TLHLPGSNLQ SSRLRSSLNA RDMPLEDLNV LPDFNSQPRI LNDLNCFSQP 480 CPTPVSVSRS GWTQTLTPNN LEELFSSEIS SSPRFSDPAA NVFSPTRKST MLNQFQQQQQ 540 QNMSSPINTS IMSPKNVDHH LLQASYGVSS PGRMSPRNSE PHSPMGSRFS AFVQREKQHL 600 RTLSSRELGS NVPSSLIGSP INSLPKWGSP NGKVDWSVGK NELGQQLRRS SSFEMGNNGE 660 EPDLSWVQTL VKESPPEMLK EKLAVPGRGG AASGEGLTTT KPQLESTDHS VIGAWLEQMQ 720 LDQLVV

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence

MCGGPEKSNS ASTTSARLPN PKDMNHLTVD CEDSFYSLLE LASDNDAEGL KSMMESDLFS  60
LNKSGLWYVR QKGSKQVVNE HRTPLMVAAT YGCVDVLKLI LSYPEVDVNL SSGTDKSTAL  120
HCATSSGSVN AVDIVDLLLS AGADPKTKDV NGDRPVDVIF VHPKLQKQNT RFRLEELLNN  180
HSSGSLDVSC LHLSLKMPDS ESPPLSSSLE DEFRSTPKSI SSPKFTDGFA NSTKEKKEYP  240
IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPDFRKGA CRHGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTNEELRP  360
LYVSTGSAVP SPRSIGSAPT VMDMATALGL LPGSPSSVSA LSPSPFTQAM SPSSNGVCHS  420
SVNWQQPNVP TLHLPGSNLQ SSRLRSSLNA RDMPLEDLNV LPDFNSQPRI LNDLNCFSQP  480
CPTPVSVSRS GWTQTLTPNN LEELFSSEIS SSPRFSDPAA NVFSPTRKST MLNQFQQQQQ  540
QNMSSPINTS IMSPKNVDHH LLQASYGVSS PGRMSPRNSE PHSPMGSRFS AFVQREKQHL  600
RTLSSRELGS NVPSSLIGSP INSLPKWGSP NGKVDWSVGK NELGQQLRRS SSFEMGNNGE  660
EPDLSWVQTL VKESPPEMLK EKLAVPGRGG AASGEGLTTT KPQLESTDHS VIGAWLEQMQ  720
LDQLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein