PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022980962.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 401aa MW: 45849.9 Da PI: 8.1842

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022980962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.4	1.4e-08	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k+++++C ++ +lC+ C + H+ H++v XP_022980962.1 17 ARPCDSCIIKRARWYCAADDAFLCQACDASVHSAnslarrHERV 60 678*****************************657788888876 PP
2	CCT	66.9	5.6e-23	346	389	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+a XP_022980962.1 346 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRA 389 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MMPRKSVQKT AEGGKTARPC DSCIIKRARW YCAADDAFLC QACDASVHSA NSLARRHERV 60 RLQSVSYRTS SDNSSAASWH QGFTRKPRSP RMGKTTPMRK PFPQVPEVNA KEETEDQEQL 120 LLYRVPELGA DSKVGNLFSF VGEKENSIGY LSYDMDPAEF AADVESLLGK SLNNKCFDME 180 ELGLAASKDH STTKDDYSLN SHELIRIEQD EIEKLTPMLR AEGETMREPF ELNFMDFGRN 240 PRTCGEENKA MMEVKEVVKK GELEMEETKM VNNKKKVSLS LDSEAVIMAW GSRGTPWMSD 300 DGPNLDLNYH WLDYMGTWES EYYYEAYGEV SGGIRRQAAA GVEGEREARV SRYREKRRTR 360 LFAKKIRYEV RKLNAEKRPR MKGRFVKRAS CFAPTPLPLF N

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MMPRKSVQKT AEGGKTARPC DSCIIKRARW YCAADDAFLC QACDASVHSA NSLARRHERV  60
RLQSVSYRTS SDNSSAASWH QGFTRKPRSP RMGKTTPMRK PFPQVPEVNA KEETEDQEQL  120
LLYRVPELGA DSKVGNLFSF VGEKENSIGY LSYDMDPAEF AADVESLLGK SLNNKCFDME  180
ELGLAASKDH STTKDDYSLN SHELIRIEQD EIEKLTPMLR AEGETMREPF ELNFMDFGRN  240
PRTCGEENKA MMEVKEVVKK GELEMEETKM VNNKKKVSLS LDSEAVIMAW GSRGTPWMSD  300
DGPNLDLNYH WLDYMGTWES EYYYEAYGEV SGGIRRQAAA GVEGEREARV SRYREKRRTR  360
LFAKKIRYEV RKLNAEKRPR MKGRFVKRAS CFAPTPLPLF N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	357	373	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	2e-71	CO-like family protein