PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022980665.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 346aa MW: 38324.5 Da PI: 7.0687

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022980665.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv+++ +G g+W+++++ g+ R++k+c++rw +yl XP_022980665.1 14 RGLWSPEEDEKLVNYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	47.4	4.5e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E l+v+++ lG++ W+ Ia+ ++ gRt++++k++w++ XP_022980665.1 67 RGSFSPQEAALIVQLHSILGNR-WAQIAKQLP-GRTDNEVKNFWNS 110 899*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIVQ LHSILGNRWA QIAKQLPGRT DNEVKNFWNS NVKKKLISHE 120 VSALATFPGH LQNPNVSINN EGFFILNANP NLILTTSAHQ DQPCLPTSTI QPGYDLIDYK 180 LQQFTNLNPN ANLVHLLPSL SPSTNFLPHS PPLWQSLGGY HPQSLDSDQL MVASGEFVTP 240 TTTLPQYVDG SILHPAKLCE VGEENFWSSI PQISAPLQDL DPFTKLSSFP NGYYPQDQCL 300 AANQMAMEQI DKIMSSILQI PSCSSSSSLL GLSELSSNLV SLSWGV

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIVQ LHSILGNRWA QIAKQLPGRT DNEVKNFWNS NVKKKLISHE  120
VSALATFPGH LQNPNVSINN EGFFILNANP NLILTTSAHQ DQPCLPTSTI QPGYDLIDYK  180
LQQFTNLNPN ANLVHLLPSL SPSTNFLPHS PPLWQSLGGY HPQSLDSDQL MVASGEFVTP  240
TTTLPQYVDG SILHPAKLCE VGEENFWSSI PQISAPLQDL DPFTKLSSFP NGYYPQDQCL  300
AANQMAMEQI DKIMSSILQI PSCSSSSSLL GLSELSSNLV SLSWGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	8e-81	MYB family protein