PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022980397.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family LBD
Protein Properties Length: 230aa    MW: 24745.4 Da    PI: 8.3308
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022980397.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.97.9e-3925124199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq + +fa+vhk+FGasnv+kll ++pe++r da+ +++yeA+ar+r+Pv G+v++i++lqqq ++l+++l
  XP_022980397.1  25 PCGACKFLRRKCTPECIFAPYFDSEQgTTHFAAVHKVFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVQL 119
                     7***********************9988******************************************************************* PP

          DUF260  95 allke 99 
                     ++l++
  XP_022980397.1 120 SYLQA 124
                     99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MSSRHGGGGC KEGNGGSSSN GSGGPCGACK FLRRKCTPEC IFAPYFDSEQ GTTHFAAVHK  60
VFGASNVSKL LLHIPEHKRL DAAITICYEA QARVREPVFG CVAHIFALQQ QAARLQVQLS  120
YLQAYLAASE LSRTAPHPQA QPQDLVKLTI PSIVNLPLDC PSLPAAASDL SLLLDPVEQA  180
SPAKLQSPLE FCQIRSNNFP SMGSIDQQIV QKQLSTMQRI GASLFPYVPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-50LBD family protein