PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022980234.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 674aa MW: 74789.1 Da PI: 5.934 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.7 | 2.7e-20 | 52 | 107 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ +qVk+WFqNrR+++k XP_022980234.1 52 KKRYHRHTPQQIQELEAMFKECPHPDEKQRLELSRRLSLEIKQVKFWFQNRRTQMK 107 688999***********************************************999 PP | |||||||
2 | START | 175.1 | 4.4e-55 | 210 | 419 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 +a++a++elvk+a eep+W + +n++e+ + f+ + + + +ea+r+s++++ + l+ +l++ + +W e+++ a+t++vis g XP_022980234.1 210 MALAAMDELVKMANGEEPLWIGEK--LNEEEYSRMFSGGCFggFVSEASRESALLFLHSSALLDTLMEAN-RWVEMFPnliaTATTTDVISGGmg 301 6899*******************9..**********66655999**************************.************************ PP ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS START 89 ....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178 galqlm aelq lsp+vp R f+R+++q+ +g+w++vdvS+d+ ++ + s+++ R lpSg+li++++ng+skvtwveh +++++++h XP_022980234.1 302 gtrnGALQLMHAELQILSPMVPvRQLNFLRFCKQHAEGVWTVVDVSIDPITDTS-SPPCRR---LPSGCLIHDMPNGYSKVTWVEHSEYDESQIH 392 ****************************************************98.888888...******************************* PP HHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 179 wllrslvksglaegaktwvatlqrqce 205 +l+r+lv+sgl +ga++w atlqrq e XP_022980234.1 393 ELYRPLVRSGLGFGARRWIATLQRQSE 419 ************************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence |
MIPADVGFEE NVRRRRREEE ATDSRSGSDN MDGGGGSGDD LDAAVGDNPR KKKRYHRHTP 60 QQIQELEAMF KECPHPDEKQ RLELSRRLSL EIKQVKFWFQ NRRTQMKTQL ERHENTLLRH 120 ENEKLRTENM AIREAMRSPI CSNCGGPAII GEISLEEQQL RIENARLKDE LDRVCALAGK 180 FVVRPVPVSP PLEEYGGGMM MMERCVYLEM ALAAMDELVK MANGEEPLWI GEKLNEEEYS 240 RMFSGGCFGG FVSEASRESA LLFLHSSALL DTLMEANRWV EMFPNLIATA TTTDVISGGM 300 GGTRNGALQL MHAELQILSP MVPVRQLNFL RFCKQHAEGV WTVVDVSIDP ITDTSSPPCR 360 RLPSGCLIHD MPNGYSKVTW VEHSEYDESQ IHELYRPLVR SGLGFGARRW IATLQRQSEA 420 LATLISSPSD HSGISADGRR NMVKLAQRMT ANFCTGVCAS TVYKWNKLNT GNNNVGEDVR 480 VMTRKSVEDP GEPPGTVLSA ATSVWVAATA ERVFEFLRDE RLRSEWDILS NGGPMQEMLH 540 IPKAHHHHHA NAVSLLRATQ SLNPNQSSML ILQETCSDAS GSLVVYAPVD IPAMQVVMNG 600 GDSAYVALLP SGFAVVPAAE DCGGGSLLTV AFQILVNSLP TDKLTVESVE TVNNLISCTV 660 QKIKTALRCH ELST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |