PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022979558.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 424aa MW: 47565.9 Da PI: 6.5117

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022979558.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.3	1.3e-15	82	141	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n+ k+ ++++lg ++ +e Aa+ ++ a++k++g XP_022979558.1 82 SIYRGVTRHRWTGRFEAHLWDkSSWNNiqnKKgRQVYLGAYDNEEAAARTYDLAALKYWG 141 57*****************777799977447***********************98 PP
2	AP2	52.2	1.5e-16	184	236	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g+ XP_022979558.1 184 SKYRGVARHHHNGRWEARIGRvF---G-SKYLYLGTYNTQEEAAAAYDMAAIEYRGA 236 89**99******99966...3.5***********************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MRIISPPVSS SSPSPSSSSS SSSSCIGSDS GIHNNNLAAP HRPQSEKTTA KRRRRNQDET 60 KCQIHNHNAN GSNNASPARR SSIYRGVTRH RWTGRFEAHL WDKSSWNNIQ NKKGRQVYLG 120 AYDNEEAAAR TYDLAALKYW GPGTTLNFPV ESYTNQVEEM RKVSKEEYLA SLRRQSSGFS 180 RGVSKYRGVA RHHHNGRWEA RIGRVFGSKY LYLGTYNTQE EAAAAYDMAA IEYRGANAVT 240 NFDISNYIGR LQNKSSPDHP NCSPASSQGE VVQQQQQQDD VDQRQQHQQQ IAFSGPPDLQ 300 FSIENNPALV VMDEPPTQDD HDLHWSFLDT GLFVHVPDLP LEKSSELADL YFDEIRFEDD 360 IGLMFEASLE NNKNCEGNNN DDDDNVGKKE VNNCNEKIRL FAATTTTSPS SSSITTSVSC 420 EFRV

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MRIISPPVSS SSPSPSSSSS SSSSCIGSDS GIHNNNLAAP HRPQSEKTTA KRRRRNQDET  60
KCQIHNHNAN GSNNASPARR SSIYRGVTRH RWTGRFEAHL WDKSSWNNIQ NKKGRQVYLG  120
AYDNEEAAAR TYDLAALKYW GPGTTLNFPV ESYTNQVEEM RKVSKEEYLA SLRRQSSGFS  180
RGVSKYRGVA RHHHNGRWEA RIGRVFGSKY LYLGTYNTQE EAAAAYDMAA IEYRGANAVT  240
NFDISNYIGR LQNKSSPDHP NCSPASSQGE VVQQQQQQDD VDQRQQHQQQ IAFSGPPDLQ  300
FSIENNPALV VMDEPPTQDD HDLHWSFLDT GLFVHVPDLP LEKSSELADL YFDEIRFEDD  360
IGLMFEASLE NNKNCEGNNN DDDDNVGKKE VNNCNEKIRL FAATTTTSPS SSSITTSVSC  420
EFRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-102	AP2 family protein