PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022979152.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 856aa    MW: 94959.6 Da    PI: 7.4035
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022979152.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.8e-06230250526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C +f + G C++G++C+F+H+
  XP_022979152.1 230 YCTDFVK-GRCHRGASCTFSHD 250
                     59*****.*************6 PP

2zf-CCCH21.54.1e-07291312426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C++fa+ G C+ G +Ck++H 
  XP_022979152.1 291 VICKYFAA-GSCRNGKNCKYSHH 312
                     58**9999.*************5 PP

Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    
MSGSGRKHSS KWDLREDSHF EADSVQDHSW PGKESRPGWI SAEIASDDGS KWSGMATTNT  60
VSKPTQDWGL LSEEEPLPGT RASLKEDRPN KGYNKNMDGT AECDAEESYD MRMSPDLDGR  120
RSHGSNLPDR NDWIGGRSRS RSWSRSPPHG NKRDSGFHDR NTNRTRVSTQ LCRDFTSGRC  180
RRGSGCQFLH QDDQNLDDSL ENRNRKGARS FRSTSHDFKD YPRSGRSAAY CTDFVKGRCH  240
RGASCTFSHD SAFHELSRDS PNDISRDRKN ERTKEAYFSR GEREPCSSSL VICKYFAAGS  300
CRNGKNCKYS HHSQSRASPE RKSSTDKLEH VQCSDGREQL WDGLKSSELA SGSDFTQLIE  360
DKKEQTANEE PRYTWPSDQK CDHGLNNESK TRWDRAVDIK TVRSNKNDAI PSKAENAGGC  420
TGSSDPRGHR KWPSDDMEMS PDWHYPVQPS NHVVKGDCNV MQDSGSQTST ALAISHATVQ  480
EGLAKNQDIA IEPIVVDITR FRKSHTLTKD DTIASASNDN ITIDRTVTSH AEGNPSGNVV  540
LGQRMAYHSD HPDGTVTNPK ISDGNFRVKL QKEDESMPGI NSGTTVTPNI VTNDQIRQIT  600
DLSASLAQYF GNAQPLPQLY ASLNTRSVSE APSFPYSDAP MGALGTSMKT GPVNESSKQH  660
DSALCNSLQL KKLEVTKTPQ KSTTEVKGEV QIPNLPLSSG PCGISAEETL HGKPTADGDA  720
IKEKNGDGNN ENKTDPATNE DSQKIDTTEN ANGNDEVHDK KKSKDMKGIR AFKFALVEFV  780
KELLKPTWKE GHISKDVYKT IVKKVVDKVT GSLQDGHIPQ TQEKIDHYLS FSKSKLTKLV  840
QVMHILKIQL VATITF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-09C3H family protein