PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022979152.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 856aa MW: 94959.6 Da PI: 7.4035 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.8 | 5.8e-06 | 230 | 250 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +f + G C++G++C+F+H+ XP_022979152.1 230 YCTDFVK-GRCHRGASCTFSHD 250 59*****.*************6 PP | |||||||
2 | zf-CCCH | 21.5 | 4.1e-07 | 291 | 312 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++fa+ G C+ G +Ck++H XP_022979152.1 291 VICKYFAA-GSCRNGKNCKYSHH 312 58**9999.*************5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 856 aa Download sequence |
MSGSGRKHSS KWDLREDSHF EADSVQDHSW PGKESRPGWI SAEIASDDGS KWSGMATTNT 60 VSKPTQDWGL LSEEEPLPGT RASLKEDRPN KGYNKNMDGT AECDAEESYD MRMSPDLDGR 120 RSHGSNLPDR NDWIGGRSRS RSWSRSPPHG NKRDSGFHDR NTNRTRVSTQ LCRDFTSGRC 180 RRGSGCQFLH QDDQNLDDSL ENRNRKGARS FRSTSHDFKD YPRSGRSAAY CTDFVKGRCH 240 RGASCTFSHD SAFHELSRDS PNDISRDRKN ERTKEAYFSR GEREPCSSSL VICKYFAAGS 300 CRNGKNCKYS HHSQSRASPE RKSSTDKLEH VQCSDGREQL WDGLKSSELA SGSDFTQLIE 360 DKKEQTANEE PRYTWPSDQK CDHGLNNESK TRWDRAVDIK TVRSNKNDAI PSKAENAGGC 420 TGSSDPRGHR KWPSDDMEMS PDWHYPVQPS NHVVKGDCNV MQDSGSQTST ALAISHATVQ 480 EGLAKNQDIA IEPIVVDITR FRKSHTLTKD DTIASASNDN ITIDRTVTSH AEGNPSGNVV 540 LGQRMAYHSD HPDGTVTNPK ISDGNFRVKL QKEDESMPGI NSGTTVTPNI VTNDQIRQIT 600 DLSASLAQYF GNAQPLPQLY ASLNTRSVSE APSFPYSDAP MGALGTSMKT GPVNESSKQH 660 DSALCNSLQL KKLEVTKTPQ KSTTEVKGEV QIPNLPLSSG PCGISAEETL HGKPTADGDA 720 IKEKNGDGNN ENKTDPATNE DSQKIDTTEN ANGNDEVHDK KKSKDMKGIR AFKFALVEFV 780 KELLKPTWKE GHISKDVYKT IVKKVVDKVT GSLQDGHIPQ TQEKIDHYLS FSKSKLTKLV 840 QVMHILKIQL VATITF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-09 | C3H family protein |