PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022979150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 859aa    MW: 95302 Da    PI: 7.5079
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022979150.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.8e-06233253526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C +f + G C++G++C+F+H+
  XP_022979150.1 233 YCTDFVK-GRCHRGASCTFSHD 253
                     59*****.*************6 PP

2zf-CCCH21.54.1e-07294315426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C++fa+ G C+ G +Ck++H 
  XP_022979150.1 294 VICKYFAA-GSCRNGKNCKYSHH 315
                     58**9999.*************5 PP

Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    
MSGSGRKHSS KWDLREDSHF EADSVQDHSW PGKESRPGWI SAEIASDDGS KWSGMATTNT  60
VSKPTQDWGL LSEEEPLPGT RASLKEDRPN KGYNKNMDGT AECDAEESYD MRMSPDLDGR  120
RSHGSNLPDR NDWIGSVRGR SRSRSWSRSP PHGNKRDSGF HDRNTNRTRV STQLCRDFTS  180
GRCRRGSGCQ FLHQDDQNLD DSLENRNRKG ARSFRSTSHD FKDYPRSGRS AAYCTDFVKG  240
RCHRGASCTF SHDSAFHELS RDSPNDISRD RKNERTKEAY FSRGEREPCS SSLVICKYFA  300
AGSCRNGKNC KYSHHSQSRA SPERKSSTDK LEHVQCSDGR EQLWDGLKSS ELASGSDFTQ  360
LIEDKKEQTA NEEPRYTWPS DQKCDHGLNN ESKTRWDRAV DIKTVRSNKN DAIPSKAENA  420
GGCTGSSDPR GHRKWPSDDM EMSPDWHYPV QPSNHVVKGD CNVMQDSGSQ TSTALAISHA  480
TVQEGLAKNQ DIAIEPIVVD ITRFRKSHTL TKDDTIASAS NDNITIDRTV TSHAEGNPSG  540
NVVLGQRMAY HSDHPDGTVT NPKISDGNFR VKLQKEDESM PGINSGTTVT PNIVTNDQIR  600
QITDLSASLA QYFGNAQPLP QLYASLNTRS VSEAPSFPYS DAPMGALGTS MKTGPVNESS  660
KQHDSALCNS LQLKKLEVTK TPQKSTTEVK GEVQIPNLPL SSGPCGISAE ETLHGKPTAD  720
GDAIKEKNGD GNNENKTDPA TNEDSQKIDT TENANGNDEV HDKKKSKDMK GIRAFKFALV  780
EFVKELLKPT WKEGHISKDV YKTIVKKVVD KVTGSLQDGH IPQTQEKIDH YLSFSKSKLT  840
KLVQVMHILK IQLVATITF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-09C3H family protein