PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022979145.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 267aa    MW: 31409.4 Da    PI: 6.6298
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022979145.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.11.7e-261059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRr+g++KK +ELSvLCda++ +i+fss+gkl+ y++
  XP_022979145.1 10 RIENRTTRQVTFSKRRAGVFKKTHELSVLCDAQIGLIVFSSNGKLFQYCT 59
                    8***********************************************96 PP
2K-box35.35e-13841661191
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk..kekelqeen 91 
                      ++ e+l++ l+ ++k ++ Lq ++ ++  ed ++ +l++L+ +e++L++sl ++R++K+++l ++ e+  +  ke+++  e+
  XP_022979145.1  84 MNHPEELERRLRIMRKDTDDLQLSLQRYTAEDFSTFQLRDLHDIENRLQNSLDRVRARKEKMLEDENEQIYHliKEQQMAMEE 166
                     5678999999******************************************************9998876622444444444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MGRGKIAIRR IENRTTRQVT FSKRRAGVFK KTHELSVLCD AQIGLIVFSS NGKLFQYCTQ  60
PACMDQIIRR YQIAVGNPIP EQNMNHPEEL ERRLRIMRKD TDDLQLSLQR YTAEDFSTFQ  120
LRDLHDIENR LQNSLDRVRA RKEKMLEDEN EQIYHLIKEQ QMAMEEQQVV AMMQKRRSDD  180
VEDEQVVNMD GDDGFGFDNS SNDIHPHLQL QLQHYHQHQH QHHHEPSSVL QLAPLPSPPP  240
PPPFLPYRLQ PFQPNLQDIN LHSSTYE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.39e-42MIKC_MADS family protein