PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022979028.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HB-PHD
Protein Properties Length: 899aa    MW: 98759.1 Da    PI: 5.1898
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022979028.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.62.1e-13717767656
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++  le+L + F++n+yp ++++e LA++lgL+ +qV+ WF N R   +
  XP_022979028.1 717 RLSQPTLERLLASFQENQYPERATKESLARELGLSLKQVSKWFENTRWSTR 767
                     678999*****************************************8766 PP

2PHD36.88.8e-13341396151
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C  Cg+     e++++lCdg C++ fH+ Cl+++l ++++p +   wlC+ C++k
  XP_022979028.1 341 FCGKCGSkeLSLENDIILCDGvCDRGFHQFCLEPPLLNSDIPPDdeGWLCPGCDCK 396
                     699999965556********77******************999999*******985 PP

Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    
MEERDEYTES RTISKSAAVQ EAKASVEVEV LTSLANEQID SAPNYLELGT IRDWTSKTGS  60
PDEEKPGVKQ NMEEDSKELC LGEAHSELPE KSSQTISKLA ENDQGEAGNL LSSDKDTENL  120
ILPIEVETTA LLNECSEPPT EDDNKNYIEQ ANPPIEASIQ NTSIKNLNMV PDNSPELGCK  180
DKRVLKSKKK NYILRSLVSS DRVLRSRTQD KAKAPEPSND LSNVTAGEEG KGKKRKKNRK  240
IKGKGARVDE FSSIRNHLRY LVNRIKYEQS LIEAYSSEGW KGFSSDKLKP EKELQRASNE  300
IMRRKLKIRD LFQRIDALCS EGRFSEALFD SEGQIDSEDI FCGKCGSKEL SLENDIILCD  360
GVCDRGFHQF CLEPPLLNSD IPPDDEGWLC PGCDCKDDCI DLLNEFQGSN LSITDGWEKV  420
FPEAAAAAAG RSSDHTMSLP SDDSDDGDYD PDVPDAIDQD GESSSDHSSS DQSSSDKSGY  480
ASASASEELE APPNDDQYLG LPSDDSEDDD YDPGAPVRDE GVGQESSSSD FTSDSEDLAA  540
LVDNGSSKDD NIASSPLNNT APVRNSNGQS SGRGPNKNAQ HNKLSSLVGS GPDEGGLELV  600
SGRRHVERLD YKKLHDETFG NVPSNSSDDT YGSDSIDSSD DRGRGRSTRK GSPKNLVPAL  660
SRNGTDDSKN IKTKCSSRRT RQKPAAENMD NSVTKTPEGT LKSSSSVRRT TSSSHRRLSQ  720
PTLERLLASF QENQYPERAT KESLARELGL SLKQVSKWFE NTRWSTRHPS SEANKAKSAS  780
RMGTQSSQTS RKSPKPEQES GACFRDTCSN GAQHQESPKA ITVVAPCQSG VTGDDKLAYH  840
KTKRPESTAT KSRKRKGRSD QVASRSKNRK KSRKPPAKSS KVDEIQTADK VKKRRRKSM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233237KKRKK
2854874KRKGRSDQVASRSKNRKKSRK
3892897KKRRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.14e-88HB-PHD family protein