PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022979028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | HB-PHD | ||||||||
Protein Properties | Length: 899aa MW: 98759.1 Da PI: 5.1898 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 41.6 | 2.1e-13 | 717 | 767 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ le+L + F++n+yp ++++e LA++lgL+ +qV+ WF N R + XP_022979028.1 717 RLSQPTLERLLASFQENQYPERATKESLARELGLSLKQVSKWFENTRWSTR 767 678999*****************************************8766 PP | |||||||
2 | PHD | 36.8 | 8.8e-13 | 341 | 396 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C Cg+ e++++lCdg C++ fH+ Cl+++l ++++p + wlC+ C++k XP_022979028.1 341 FCGKCGSkeLSLENDIILCDGvCDRGFHQFCLEPPLLNSDIPPDdeGWLCPGCDCK 396 699999965556********77******************999999*******985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 899 aa Download sequence |
MEERDEYTES RTISKSAAVQ EAKASVEVEV LTSLANEQID SAPNYLELGT IRDWTSKTGS 60 PDEEKPGVKQ NMEEDSKELC LGEAHSELPE KSSQTISKLA ENDQGEAGNL LSSDKDTENL 120 ILPIEVETTA LLNECSEPPT EDDNKNYIEQ ANPPIEASIQ NTSIKNLNMV PDNSPELGCK 180 DKRVLKSKKK NYILRSLVSS DRVLRSRTQD KAKAPEPSND LSNVTAGEEG KGKKRKKNRK 240 IKGKGARVDE FSSIRNHLRY LVNRIKYEQS LIEAYSSEGW KGFSSDKLKP EKELQRASNE 300 IMRRKLKIRD LFQRIDALCS EGRFSEALFD SEGQIDSEDI FCGKCGSKEL SLENDIILCD 360 GVCDRGFHQF CLEPPLLNSD IPPDDEGWLC PGCDCKDDCI DLLNEFQGSN LSITDGWEKV 420 FPEAAAAAAG RSSDHTMSLP SDDSDDGDYD PDVPDAIDQD GESSSDHSSS DQSSSDKSGY 480 ASASASEELE APPNDDQYLG LPSDDSEDDD YDPGAPVRDE GVGQESSSSD FTSDSEDLAA 540 LVDNGSSKDD NIASSPLNNT APVRNSNGQS SGRGPNKNAQ HNKLSSLVGS GPDEGGLELV 600 SGRRHVERLD YKKLHDETFG NVPSNSSDDT YGSDSIDSSD DRGRGRSTRK GSPKNLVPAL 660 SRNGTDDSKN IKTKCSSRRT RQKPAAENMD NSVTKTPEGT LKSSSSVRRT TSSSHRRLSQ 720 PTLERLLASF QENQYPERAT KESLARELGL SLKQVSKWFE NTRWSTRHPS SEANKAKSAS 780 RMGTQSSQTS RKSPKPEQES GACFRDTCSN GAQHQESPKA ITVVAPCQSG VTGDDKLAYH 840 KTKRPESTAT KSRKRKGRSD QVASRSKNRK KSRKPPAKSS KVDEIQTADK VKKRRRKSM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 233 | 237 | KKRKK |
2 | 854 | 874 | KRKGRSDQVASRSKNRKKSRK |
3 | 892 | 897 | KKRRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 4e-88 | HB-PHD family protein |