PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022978555.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 218aa MW: 25665 Da PI: 9.4318 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.6 | 2.5e-19 | 61 | 114 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le F +++++ +e++ +LA++lgL+ +qV +WFqNrRa++k+ XP_022978555.1 61 KRKLSSEQVKLLEMNFGNEHKLETERKNRLASELGLDPSQVAIWFQNRRARWKN 114 56899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 112.6 | 2.5e-36 | 60 | 151 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqvklLE++F +e+kLe+erK++la+eLgl+p qva+WFqnrRAR+k+++lE++y+ Lk+a+d+ + ++++L+++ e+L+++l+e XP_022978555.1 60 KKRKLSSEQVKLLEMNFGNEHKLETERKNRLASELGLDPSQVAIWFQNRRARWKNQKLEHQYSILKKAHDSAVLQKTHLQSQIEKLKQQLAE 151 9***************************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MAAVNLRPDD DNSTLISHFY NPEIYTQMLP QQGTAEGNKP TKRRRRRSRV KEVASTAGLK 60 KRKLSSEQVK LLEMNFGNEH KLETERKNRL ASELGLDPSQ VAIWFQNRRA RWKNQKLEHQ 120 YSILKKAHDS AVLQKTHLQS QIEKLKQQLA EAKNEIQKLV EVREINRRSS VTMDDVQAAA 180 CWGEILMEEY EDVFCSMQEN NYNQPVEWYL NYNYMYTN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 47 | KRRRRR |
2 | 42 | 63 | KRRRRRSRVKEVASTAGLKKRK |
3 | 43 | 64 | KRRRRRSRVKEVASTAGLKKRK |
4 | 44 | 65 | KRRRRRSRVKEVASTAGLKKRK |
5 | 45 | 66 | KRRRRRSRVKEVASTAGLKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-50 | HD-ZIP family protein |