PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022978394.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | ARF | ||||||||
Protein Properties | Length: 619aa MW: 68043.9 Da PI: 6.6985 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.5 | 6.1e-24 | 120 | 221 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF + + XP_022978394.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfppldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIVFL--RAE 210 89****************************996555555..89***********************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_022978394.1 211 NGDLCVGIRRA 221 8999****997 PP | |||||||
2 | Auxin_resp | 111.3 | 9.4e-37 | 264 | 346 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 aa+ a+++++Fe+v++Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gtv +v+ +dp+rWp+S+Wr+L XP_022978394.1 264 AATLAANGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTVNSVQVADPLRWPESPWRLL 346 68899****************************************************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence |
MITFMDSKEK SREMEKCLDP QLWHACAGGM VHMPPVNARV FYFPQGHAEH ACAPPVDFRT 60 CPKLPSYTLC RVSAINFLAD PDTDEVFAKL RLIPINGSEL DFDDGIGRLN GSEQDKPTSF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPPLD YSADPPVQTI LAKDVHGETW KFRHIYRGTP 180 RRHLLTTGWS SFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKRGAGDGPD SSCGWNGAVP 240 YGAFSANESL MGKGKVKAES VIEAATLAAN GQPFEIVFYP RASTPEFCVK AALVKAALQI 300 RWCSGMRFKM AFETEDSSRI SWFMGTVNSV QVADPLRWPE SPWRLLLVTW DEPDLLQNVK 360 RISPWLVESV SNMSPIHIAP FSSPRKKFRH PQHPDFPLDN LPPMPLFSSY LHGSGSPFGC 420 PPDNNSAGMQ GARHAHFGLS LSDFHLSKLH SGLFPIGYRS PDPAAESATL SCNAMTEKPS 480 MSENVSCLLT MAHSTQASKK CDGVKTPQLI LFGRPILTEL HMSQTYSGDT VSSVGTGNSS 540 PEGNGDRMEK GADGSGSSLH QQRPLEASSC ENFQCYKDDR QEVEPNVDPG HCKVFMESED 600 RLHQNSKKID NSIDSEVTI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | ARF family protein |