PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022978039.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 549aa    MW: 60936.8 Da    PI: 6.8168
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022978039.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.21.2e-1261785491374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++cA+a++++dl+ a+ +L  l +++s +gdp qRl ay++e+L+a+l rs+s +ykal+++e +   sse +++++++++++P++kf++
  XP_022978039.1 178 LRDTLIHCAQAIHDSDLNVATLFLDVLGKMVSVSGDPAQRLGAYLLEGLRAKLERSGSAIYKALKCEEPT---SSELMSYMSVLFQICPYFKFAY 269
                     5789*****************************************************************9...9999****************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                       aN  I ea+ +e  +HiiDf+i qG Q+++L++ La+Rp+gpp  lRiTgv++++s+  +   l+ +g++La++A++ g+pf+f++ +a +  
  XP_022978039.1 270 TSANAVIWEAMVNEPIIHIIDFQIAQGSQYIPLIHDLANRPGGPPvLLRITGVDDSQSShaRGGGLHLVGQKLAQLAQSKGIPFQFHA-AAMSGC 363
                     *****************************************9999789*******9988889999***********************.899999 PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     ++e ++Lr++pgEalaVn+ + lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n+++Fl rfle+l+yy+a+f+s+++  +r++++r
  XP_022978039.1 364 EVERSNLRIRPGEALAVNFPYVLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIVEQESNTNTSPFLLRFLETLDYYTAMFESIDVARSRDDKQR 458
                     *********************************************************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     i  E+++++r+ivn+vaceg+er+erhe l+kWr+r+++aGF+++pls+++   ++ llr ++++ yr++e +g+l+lgWk+r++ + SaWr
  XP_022978039.1 459 IRAEQHCVARDIVNMVACEGFERIERHELLGKWRMRMKMAGFTSYPLSSSVSGAVRNLLRDFNGN-YRLQEVDGALYLGWKNRAMATSSAWR 549
                     ***************************************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    
MRASQNSQAS SGIHEMHHQS VQKIDPYYLS HLHVLKNNVS PDASSQGNSV NFSSFKDQFF  60
TLESFPATAD LSACNSPSAV SGLSSRSPFS PQGSQSCSSD QPHSFDNTCG SPQSGCSVTD  120
DDNELKYKLK ELEISLLGPE SDIVDSCYCS FRGGAHQDAS VARWNWNQVA EMIPRLNLRD  180
TLIHCAQAIH DSDLNVATLF LDVLGKMVSV SGDPAQRLGA YLLEGLRAKL ERSGSAIYKA  240
LKCEEPTSSE LMSYMSVLFQ ICPYFKFAYT SANAVIWEAM VNEPIIHIID FQIAQGSQYI  300
PLIHDLANRP GGPPVLLRIT GVDDSQSSHA RGGGLHLVGQ KLAQLAQSKG IPFQFHAAAM  360
SGCEVERSNL RIRPGEALAV NFPYVLHHMP DESVSTQNHR DRLLRLVKSL SPKVVTIVEQ  420
ESNTNTSPFL LRFLETLDYY TAMFESIDVA RSRDDKQRIR AEQHCVARDI VNMVACEGFE  480
RIERHELLGK WRMRMKMAGF TSYPLSSSVS GAVRNLLRDF NGNYRLQEVD GALYLGWKNR  540
AMATSSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein