PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022977342.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 715aa MW: 79907 Da PI: 5.9823

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022977342.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.8e-06	122	142	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C ff++ G C GdrC F Hgp XP_022977342.1 122 CIFFQK-GLCLKGDRCAFLHGP 142 ****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence
MVGGGPQVLE RPQQSLPQPL SAAEEEAVKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV 60 NPRDCWFWLN GNCLNPKCSF RHPPLDGLVG TPHSTTPSSQ IPSQTSAIPS APVNSSKQAV 120 SCIFFQKGLC LKGDRCAFLH GPSPVPTNKV HQMATNGQAS EPPSVKKIAG GTQRSNQEKK 180 NPQEIFLKSV GDASVKLAMK DESVPSKIGN INEKSRPLAK VADGGSRYKA TKSLPILNES 240 SLSRGNRLQQ SHVIDDHGLQ NGKDADEFLK ESSPGFDVLV DDELRGSGYY GSEEQYGRTR 300 GHDGANMISM NDYDISHSAD YKMMANVDHD VYNDVTDYDY DTRKGQYGWD QRWTSSEKLS 360 LGSAQMERRL SRKSISPEHV QNVDLRHRLN KQRRGNGLRS VINNDNVANR PEERNYNASR 420 RDSHPSQESS MSNRLRGRIK LPRIPSPVSS NVGPERDFNR GRPGGRLSPG RSLSLSYQES 480 NRDEMKGRLE VDYNNERRNF NGLNSGRDGM DETSDFAAPK RLAELKGEKH VVSKEKQTLG 540 KRKGFDNDQP GVELSFEGPK SLSEILRKKR QVKSAVDLPM NNAERESSER LKERSSIPSV 600 EQGGLSSTSK QKANSLEGIM SAPVETFGKE ENINVTHHNS SQPIHSTDDH GIEAYEETFE 660 DPEYEGDDLR DGEYEYEEVD DREYNYEEGD NVVPEEEYMD DEDGDDFAKK IGVMS

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence

MVGGGPQVLE RPQQSLPQPL SAAEEEAVKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV  60
NPRDCWFWLN GNCLNPKCSF RHPPLDGLVG TPHSTTPSSQ IPSQTSAIPS APVNSSKQAV  120
SCIFFQKGLC LKGDRCAFLH GPSPVPTNKV HQMATNGQAS EPPSVKKIAG GTQRSNQEKK  180
NPQEIFLKSV GDASVKLAMK DESVPSKIGN INEKSRPLAK VADGGSRYKA TKSLPILNES  240
SLSRGNRLQQ SHVIDDHGLQ NGKDADEFLK ESSPGFDVLV DDELRGSGYY GSEEQYGRTR  300
GHDGANMISM NDYDISHSAD YKMMANVDHD VYNDVTDYDY DTRKGQYGWD QRWTSSEKLS  360
LGSAQMERRL SRKSISPEHV QNVDLRHRLN KQRRGNGLRS VINNDNVANR PEERNYNASR  420
RDSHPSQESS MSNRLRGRIK LPRIPSPVSS NVGPERDFNR GRPGGRLSPG RSLSLSYQES  480
NRDEMKGRLE VDYNNERRNF NGLNSGRDGM DETSDFAAPK RLAELKGEKH VVSKEKQTLG  540
KRKGFDNDQP GVELSFEGPK SLSEILRKKR QVKSAVDLPM NNAERESSER LKERSSIPSV  600
EQGGLSSTSK QKANSLEGIM SAPVETFGKE ENINVTHHNS SQPIHSTDDH GIEAYEETFE  660
DPEYEGDDLR DGEYEYEEVD DREYNYEEGD NVVPEEEYMD DEDGDDFAKK IGVMS