PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022976998.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family AP2
Protein Properties Length: 542aa    MW: 61063.6 Da    PI: 8.3446
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022976998.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.9e-16230289155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_022976998.1 230 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 289
                     78*******************988886678446*************************98 PP
2AP251.52.5e-16332383155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  XP_022976998.1 332 SIYRGVTRHHQNGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 383
                     57****************988532...5************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    
MTMEVTSESQ QHSLYHHQSQ PTPAIAISNT MSNSFSASQH YNGDFLSPLS VMPLKSDGSL  60
CIMDSISRSQ TPETLPNISP KLEDFLGGAT HGRETATALS LDSRYYNQNP EANSERQQSI  120
LLHSQRYYSG MFHYPAEDVN KESHIASYCS EIRQDMEQRI NGCFGGGRNC QDLQTLSLSM  180
SPGSQSSCVT TPSQISQSGQ ATMETKKRAL ADRKQPVHRK SFDTFGQRTS QYRGVTRHRW  240
TGRYEAHLWD NSCKKEGQTR KGRQVYLGGY DMEEKAARAY DLAALKYWGP STHLNFPLKN  300
YELQIEEMMN MNRQEYVAHL RRKSSGFSRG ASIYRGVTRH HQNGRWQARI GRVAGNKDLY  360
LGTFGTQEEA AEAYDIAAIK FRGINAVTNF DTSRYDVERI MASSSLLSGE FARRNREHKP  420
TNAIKHEEPK QNIPRTDPAE VYNNNLDWRT VFHDNLLLDP SASIESTDQK SMASSGGYLN  480
NLIGVVVETE GSSKYKAHFS NASSVVSSLS SSRETSPDKP NGSSWFHLEA MEEVYGSHHH  540
RK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-140AP2 family protein