PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022974200.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HB-PHD

Protein Properties

Length: 716aa MW: 81209 Da PI: 9.2578

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022974200.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.4	1.5e-10	508	550	12	54
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 +e L ++F++n ps++ +e L+ +lgL+ ++V+ WF+N R+ XP_022974200.1 508 VEKLRQVFAENELPSRDVKENLSIELGLDAEKVSKWFKNARYS 550 789**************************************85 PP
2	PHD	35.8	1.9e-12	239	294	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCd +C+ +fH+kCl+++l++e++p g w+C+ C++k XP_022974200.1 239 FCAKCKLreAFPDNDIILCDgTCNCAFHQKCLDPPLDTENIPPGdqGWFCKFCECK 294 699999854455******56****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MRGTGRRLTQ KESGKCSHSK METGSELILP LKLKRCSKIS HSKQKKSRTK SHAQEIGSTL 60 KRRPFPKSLS KGNKNVTIRQ LAGKKFLLKK LNSKYTKDLL LSKLQGGKSL PSPSTEGNAE 120 KVEPVTKINQ QRKRRKNKGK REKVELDEAS RLQRRTRYLI IKIKLEQNLI DAYSGEGWKG 180 QSREKIRPEK ELQRAMEQIL QCKLGIRDAI RQLDLLGSVG CIEDSVIGPD GSVYHEHIFC 240 AKCKLREAFP DNDIILCDGT CNCAFHQKCL DPPLDTENIP PGDQGWFCKF CECKMEILEG 300 MNAHLGTRFS MNVSWEDIFK EEAAFPDGRN ASLNHEEDWP SDDSADDDYD PDKKEIGYDN 360 PSGEENDKDV FEESSSSTSL SWSLDGEDLT DRDSIGCEDH FGASSSIVSD GSNEEGITGG 420 RRQRQAVDYK KLYVEMFGKD STAHEQVSED EDWGPAKRRR REKECDAAST LMSLCESEKK 480 SKKIDVEAEK RPLNSQSRSF FRIPLYAVEK LRQVFAENEL PSRDVKENLS IELGLDAEKV 540 SKWFKNARYS ALRTRKAEGA TQSHSPNKTL NEPRLADSKE MSACPPSSED APIKELQLKS 600 RNSHYKKKQH RKSSLVSSNN NKDALDSGDD ISLKNLLKNR KAKVKKRVKF VARGGDRGQE 660 AEVEMERLCK IKGRLEIMKQ KLLRLSNKKE DGVLDRSHMF EQSIVYVPVA VLKEKV

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MRGTGRRLTQ KESGKCSHSK METGSELILP LKLKRCSKIS HSKQKKSRTK SHAQEIGSTL  60
KRRPFPKSLS KGNKNVTIRQ LAGKKFLLKK LNSKYTKDLL LSKLQGGKSL PSPSTEGNAE  120
KVEPVTKINQ QRKRRKNKGK REKVELDEAS RLQRRTRYLI IKIKLEQNLI DAYSGEGWKG  180
QSREKIRPEK ELQRAMEQIL QCKLGIRDAI RQLDLLGSVG CIEDSVIGPD GSVYHEHIFC  240
AKCKLREAFP DNDIILCDGT CNCAFHQKCL DPPLDTENIP PGDQGWFCKF CECKMEILEG  300
MNAHLGTRFS MNVSWEDIFK EEAAFPDGRN ASLNHEEDWP SDDSADDDYD PDKKEIGYDN  360
PSGEENDKDV FEESSSSTSL SWSLDGEDLT DRDSIGCEDH FGASSSIVSD GSNEEGITGG  420
RRQRQAVDYK KLYVEMFGKD STAHEQVSED EDWGPAKRRR REKECDAAST LMSLCESEKK  480
SKKIDVEAEK RPLNSQSRSF FRIPLYAVEK LRQVFAENEL PSRDVKENLS IELGLDAEKV  540
SKWFKNARYS ALRTRKAEGA TQSHSPNKTL NEPRLADSKE MSACPPSSED APIKELQLKS  600
RNSHYKKKQH RKSSLVSSNN NKDALDSGDD ISLKNLLKNR KAKVKKRVKF VARGGDRGQE  660
AEVEMERLCK IKGRLEIMKQ KLLRLSNKKE DGVLDRSHMF EQSIVYVPVA VLKEKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	51	KKSRTKS
2	135	142	RKNKGKRE
3	457	483	KRRRREKECDAASTLMSLCESEKKSKK
4	458	463	RRRREK
5	639	646	NRKAKVKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	1e-158	HB-PHD family protein