PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022973999.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 343aa MW: 37581.1 Da PI: 9.5946 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.6 | 5.6e-10 | 193 | 219 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 y+t +Cr + +G C++G +C+FaHg+ XP_022973999.1 193 YRTDICRSWEDSGSCRFGHKCQFAHGK 219 89***********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence |
MEDRQGKRSS KASIIKGLNP TVRPIKIQMD NHLVIGGTGH YHQETNSKIP TILDRYAEKH 60 DRSTPIVSYF RSRSPVVGKL PSAGDTFSTP VADVINASYR SSIINHFASS TSGSSSFGSR 120 RGGSSLSPLS ALENLETTPV RSPQIYGTPL KVHEEVIVMD EILISSVHGG AKTLKSALDS 180 GSGGGSSLSK NQYRTDICRS WEDSGSCRFG HKCQFAHGKE ELRPVHLPVK TKPKFGEPYL 240 THGLKSRNNH SLTGIAATTQ SNSLYATFKT ELNRRGHSIN SIHNLNTDWS PDDDGIEVVV 300 PETKSTRGDV DQHILEVLYG STTERAKKRL PVFVQLCSSR LEE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 1e-08 | C3H family protein |