PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022973845.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family M-type_MADS
Protein Properties Length: 336aa    MW: 39029.4 Da    PI: 7.2601
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022973845.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.73.1e-181151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i n+  r++tf kR++ +l KA+ELS+LCd++v+v++ +++
  XP_022973845.1 11 IGNEKSRKTTFLKRKKSLLRKAYELSTLCDVRVCVLVHGPN 51
                    78999*********************************997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MGRGKLSMQL IGNEKSRKTT FLKRKKSLLR KAYELSTLCD VRVCVLVHGP NHNDQSPFEL  60
NTWPPCREEV NNMIASYKAN CLHKRARKAF DLLDFFSERK KKLENDMSKL RKDVLEARFP  120
KWDERLDHLT EDQLQILMVK LDSKLDTMKR RIEIVTKNHE EGTSGENNQT LIANMKPEQV  180
MSYGEQSYEM FGNPSMETQP MMPFHHQYHQ QLQTMAQNRQ MDHELENLSQ ILFGSNGSSA  240
QIQSNYGNNC FQNPNFYTDP TNGMVMDNTQ SYSMCHYGVP RATQSVLPVS YMPLIDDQMM  300
MACALNTQMG LANTSAQVND QFDCFNYEYF MKPNNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-21M-type_MADS family protein