PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022973620.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family RAV
Protein Properties Length: 327aa    MW: 36250.9 Da    PI: 10.1563
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022973620.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.31.6e-124997155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s++kGV   + +grW A+I++      ++r++lg+f  + +Aaka++ a+++++g
  XP_022973620.1 49 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNQEHQAAKAYDIAALRYRG 97
                    689***9788.8*********3.....5**********99*************98 PP
2B394.57.5e-30178274192
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+ tpsdv+k++rlv+pk++ae++     g+ +++++ l +ed  g+ W+++++y+++s++yvltkGW++Fvk++ L++gD+v F ++   ++
  XP_022973620.1 178 FEKTVTPSDVGKLNRLVIPKQHAEKNfplgeGMGSAKGVLLNFEDMGGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKTLRAGDVVRFLRSTGPDK 272
                     99*****************************7777899*************************************************97655665 PP

                     .. CS
              B3  91 el 92 
                     +l
  XP_022973620.1 273 KL 274
                     55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MDTTSSLDDS TASDSTSVSP VTPLLFHSSS SSSPPGVPYD AESRKLPSSR FKGVVPQPNG  60
RWGAQIYEKH QRVWLGTFNQ EHQAAKAYDI AALRYRGRDA VTNFKPGAFS SVDAAFEADF  120
LNSHSKLEIV DMLRKHTYND ELQQSKRYGG GTTTTATATA AAHSLHNAAS ESDREVLFEK  180
TVTPSDVGKL NRLVIPKQHA EKNFPLGEGM GSAKGVLLNF EDMGGKLWRF RYSYWNSSQS  240
YVLTKGWSRF VKEKTLRAGD VVRFLRSTGP DKKLYIDGKA GGVKPVQVVR LFGVNILEVP  300
VGWCGKRDRE GLSELERTKK QRMIKAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-117RAV family protein