PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022972233.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 494aa MW: 54451.9 Da PI: 6.4367

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022972233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.3	5.6e-07	12	51	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++e+ ++l+C+ ++ lC C + H+ H XP_022972233.1 12 VPCDFCNEQVAILYCRADSAKLCLFCDNHVHSAnllsrkH 51 67***************************99545555556 PP
2	zf-B_box	17.3	1e-05	54	99	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ +++++ C +++ lC++C H + H+++p+ XP_022972233.1 54 SQICDNCRCEPVSIRCSTDNLVLCQECDWDAHGScsvsaaHDRTPI 99 689*************************999954889999988876 PP
3	CCT	61.8	2.1e-21	446	489	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeKrktR+++K irYesRKa+A++R+RvKGrFvk++ XP_022972233.1 446 RGNAMQRYKEKRKTRRYDKYIRYESRKARADTRKRVKGRFVKAS 489 7789*************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MVCSKFTTGE SVPCDFCNEQ VAILYCRADS AKLCLFCDNH VHSANLLSRK HVRSQICDNC 60 RCEPVSIRCS TDNLVLCQEC DWDAHGSCSV SAAHDRTPIE GFSGCPSVLE LVSLLGFDLG 120 DKKLEESEML VQNWGSSQDL VMQIDSWACR ASATAFNDLI VPNENPFLFA NLNCTDAAST 180 LKKRSPSCGK HKQVIYKQLV ELLKRDFQGG DDGGNTADGD AGGKDDGLEN LIPETTNGDC 240 YWQGDLEARR IEKGDDGVFA DVTAAPQPSL QQQTSFTSLL TMPPHMGLKD SERIVDDTSG 300 WDSNPNRQSI QIWDFHLGQL RGHKDSNSFD DAYGTGNMGF TIKNFCDFLK ETSPTSTKLI 360 GETYQINGSG MHDDLPSLNG HVNNSTLSHR AATCESNNLP NGTACSKLKG SSKNAQPIEQ 420 QPIIVRDGIL STSTTKADLE LLAQNRGNAM QRYKEKRKTR RYDKYIRYES RKARADTRKR 480 VKGRFVKASG GHAC

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MVCSKFTTGE SVPCDFCNEQ VAILYCRADS AKLCLFCDNH VHSANLLSRK HVRSQICDNC  60
RCEPVSIRCS TDNLVLCQEC DWDAHGSCSV SAAHDRTPIE GFSGCPSVLE LVSLLGFDLG  120
DKKLEESEML VQNWGSSQDL VMQIDSWACR ASATAFNDLI VPNENPFLFA NLNCTDAAST  180
LKKRSPSCGK HKQVIYKQLV ELLKRDFQGG DDGGNTADGD AGGKDDGLEN LIPETTNGDC  240
YWQGDLEARR IEKGDDGVFA DVTAAPQPSL QQQTSFTSLL TMPPHMGLKD SERIVDDTSG  300
WDSNPNRQSI QIWDFHLGQL RGHKDSNSFD DAYGTGNMGF TIKNFCDFLK ETSPTSTKLI  360
GETYQINGSG MHDDLPSLNG HVNNSTLSHR AATCESNNLP NGTACSKLKG SSKNAQPIEQ  420
QPIIVRDGIL STSTTKADLE LLAQNRGNAM QRYKEKRKTR RYDKYIRYES RKARADTRKR  480
VKGRFVKASG GHAC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-109	CO-like family protein