PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022971763.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 378aa MW: 42972.1 Da PI: 5.4764

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022971763.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28	4.5e-09	15	56	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + +k+++++C ++ +lC++C ++ H+ H+ XP_022971763.1 15 ARACDSCVRKRARWYCAADDAFLCQSCDSAVHSAnplarrHQ 56 578*****************************6567777776 PP
2	CCT	68.5	1.8e-23	324	366	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+ XP_022971763.1 324 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 366 9****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MLTKNIANAV GGKTARACDS CVRKRARWYC AADDAFLCQS CDSAVHSANP LARRHQRLRL 60 NTASSKPPSP SWVSGFTRKP RTPRPRRKSD DVVPLLSNPS FSLVPEADDG TWVEENEEDH 120 LLYRVPTFEP FVEETQSSKS MGDEAGNFHG FLPSDLDLEE FAADVESLLG RNLESECFDM 180 EGLGIGLSIE KDDTSTRRVK GEEDGEEADR GNCRFENELE AEVDLMREPF ELNFEEYEQE 240 LKMVGVKNER EEEDCKVEED KVKKKRKVGL QLDCDAVIAA WGNDKSPWTT GERPDFEPDS 300 SWPHCMAICG VRCGEYGGGR DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK 360 GRFVKRTGFP QSTLPITN

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MLTKNIANAV GGKTARACDS CVRKRARWYC AADDAFLCQS CDSAVHSANP LARRHQRLRL  60
NTASSKPPSP SWVSGFTRKP RTPRPRRKSD DVVPLLSNPS FSLVPEADDG TWVEENEEDH  120
LLYRVPTFEP FVEETQSSKS MGDEAGNFHG FLPSDLDLEE FAADVESLLG RNLESECFDM  180
EGLGIGLSIE KDDTSTRRVK GEEDGEEADR GNCRFENELE AEVDLMREPF ELNFEEYEQE  240
LKMVGVKNER EEEDCKVEED KVKKKRKVGL QLDCDAVIAA WGNDKSPWTT GERPDFEPDS  300
SWPHCMAICG VRCGEYGGGR DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK  360
GRFVKRTGFP QSTLPITN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	88	RPRRK
2	263	268	KKKRKV
3	335	351	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-75	CO-like family protein