PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022971567.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 540aa MW: 59792.8 Da PI: 9.4864

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022971567.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.9	1.6e-15	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia+++ R++ qc +rwqk+l XP_022971567.1 59 KGGWTPQEDETLRNAVAAFKGKHWKKIAEYFH-DRSEVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	56.7	5.7e-18	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd++++++v ++G+ W++Ia+ ++ gR +kqc++rw+++l XP_022971567.1 111 KGPWAQEEDDKIIELVSKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 157 79****************************.***********97 PP
3	Myb_DNA-binding	52.8	9.4e-17	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++++G++ W+ Iar ++ gRt++ +k++w++ XP_022971567.1 163 KDAWTLEEELALMNAHRLHGNK-WAEIARVLP-GRTDNGIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MEEVKQEECC LENKQSTAAS SSSVSEGSGS ATAKSPGMCS PASTSPARRR TSGPIRRAKG 60 GWTPQEDETL RNAVAAFKGK HWKKIAEYFH DRSEVQCLHR WQKVLNPDLV KGPWAQEEDD 120 KIIELVSKYG PTKWSLIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMNAHRL 180 HGNKWAEIAR VLPGRTDNGI KNHWNSSLKK KLDFYLATGK LPPVSKNSSQ NGARDATRTP 240 PIKNFPPHSS RGSDSTAQTS SGNTDFYKLD GSSKDQIESS APPDEDVVAS TSGVLNESAD 300 SRHVKCWPGP SNITNLRVRK SGSARKNGTK TQGESDSEIS KLDEDKTTRT PLRFESPKYG 360 SLYYEPPKLE SRIPVDSELL SIYMHETNSS LITSPIGIFT PPCVKTRDLS IHSPESILRI 420 AARSFPSTPS ILRKRKTEAQ TCLPLKQAQD GETETVKDIS QESRLEETLN NSDSMLGSPN 480 GSLCDSPSID HSPSRSNSKA FNASPPYRLT SKRTAISKSV EKQLEFAFDK EKNNHTIKSA

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MEEVKQEECC LENKQSTAAS SSSVSEGSGS ATAKSPGMCS PASTSPARRR TSGPIRRAKG  60
GWTPQEDETL RNAVAAFKGK HWKKIAEYFH DRSEVQCLHR WQKVLNPDLV KGPWAQEEDD  120
KIIELVSKYG PTKWSLIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMNAHRL  180
HGNKWAEIAR VLPGRTDNGI KNHWNSSLKK KLDFYLATGK LPPVSKNSSQ NGARDATRTP  240
PIKNFPPHSS RGSDSTAQTS SGNTDFYKLD GSSKDQIESS APPDEDVVAS TSGVLNESAD  300
SRHVKCWPGP SNITNLRVRK SGSARKNGTK TQGESDSEIS KLDEDKTTRT PLRFESPKYG  360
SLYYEPPKLE SRIPVDSELL SIYMHETNSS LITSPIGIFT PPCVKTRDLS IHSPESILRI  420
AARSFPSTPS ILRKRKTEAQ TCLPLKQAQD GETETVKDIS QESRLEETLN NSDSMLGSPN  480
GSLCDSPSID HSPSRSNSKA FNASPPYRLT SKRTAISKSV EKQLEFAFDK EKNNHTIKSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-157	MYB family protein