PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022971346.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HD-ZIP

Protein Properties

Length: 345aa MW: 37573.2 Da PI: 7.7232

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022971346.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	208	262	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le++F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k XP_022971346.1 208 RKKLRLSKEQSAFLEQCFKQHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTK 262 788899***********************************************98 PP
2	HD-ZIP_I/II	124.4	5.3e-40	208	296	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq+++LE++F+++++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr+ XP_022971346.1 208 RKKLRLSKEQSAFLEQCFKQHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEEDCEYLKRWCETLTEENRRLQKELQELRA 296 69*************************************************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MELGLRLGDA PNSNNPFGVR SIPSHNLSSS SLMALGFCVG LGHGSGSGSG SGSGSGSGRV 60 RDEDGRDVKD EDEKDDEKTI PGSGYGLDPP VQLDLLPLAP VPRSSPQSSS PLPFSCLPHP 120 LMPELGCTDK VLDVSRPPAL AAAVAMIPAE ETEDKSPNST VTSFQMDFGV RNGGGRGRTR 180 SKRSSDMEME TERSSSRISD DEENASARKK LRLSKEQSAF LEQCFKQHST LNPKQKAALA 240 KQLNLRPRQV EVWFQNRRAR TKLKQTEEDC EYLKRWCETL TEENRRLQKE LQELRAFKAS 300 QPFYSHLPAT TLTMCPSCER VVATAPAASI ATTSTTTAAP PRILI

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MELGLRLGDA PNSNNPFGVR SIPSHNLSSS SLMALGFCVG LGHGSGSGSG SGSGSGSGRV  60
RDEDGRDVKD EDEKDDEKTI PGSGYGLDPP VQLDLLPLAP VPRSSPQSSS PLPFSCLPHP  120
LMPELGCTDK VLDVSRPPAL AAAVAMIPAE ETEDKSPNST VTSFQMDFGV RNGGGRGRTR  180
SKRSSDMEME TERSSSRISD DEENASARKK LRLSKEQSAF LEQCFKQHST LNPKQKAALA  240
KQLNLRPRQV EVWFQNRRAR TKLKQTEEDC EYLKRWCETL TEENRRLQKE LQELRAFKAS  300
QPFYSHLPAT TLTMCPSCER VVATAPAASI ATTSTTTAAP PRILI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	183	RTRSKR
2	257	265	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	5e-68	HD-ZIP family protein