PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022971006.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 415aa MW: 45359.8 Da PI: 5.1008

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022971006.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.6	4.4e-07	4	45	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C+ ++++++ fC+++ +lC +C + H+ Ht++ XP_022971006.1 4 MCDFCGDQRAMVFCRSDVACLCLSCDRNVHSAnalsrrHTRT 45 7*****************************657888889876 PP
2	zf-B_box	20.3	1.2e-06	47	88	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 C++++ ++++ C d ++ lC++C ++H g H+++ XP_022971006.1 47 LCERCHLQPASVRCIDERVSLCQNCDWTGH-GtsttsssHKRQ 88 7*****************************.547777888765 PP
3	CCT	58.5	2.4e-20	358	400	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R++a+lRYkeK+ktRkFeK++rY++RKa+A+ R RvKGrFvk XP_022971006.1 358 RNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKV 400 99***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MGVMCDFCGD QRAMVFCRSD VACLCLSCDR NVHSANALSR RHTRTLLCER CHLQPASVRC 60 IDERVSLCQN CDWTGHGTST TSSSHKRQAI NCYSGCPSAA ELSSIWSFVL EVPSVNDACE 120 KEMGLMSISE TDLTGASSPL ENNNACRRMP ESTEARDVCS RDKSNILVGS SSLSDFGSRP 180 HISDQPVELA NMAVPKFCCP GTKLPGFCDD DDDIYKEFDM DEMDLNLENY EELFGMSLNH 240 SEDLFENGGI DSLFEAKGFD DSVCHSAVAA EGSSVGVVKP MQPACSNGAS ADSVMSTKTE 300 PILCFNSRQA SGVSFSGLTG ESSAGDYQDC GASSMLLMGE PPPWCAPGTE SSIPSSDRNN 360 AVLRYKEKKK TRKFEKRVRY ATRKARADVR RRVKGRFVKV GEAYDYDPLS QTRSC

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MGVMCDFCGD QRAMVFCRSD VACLCLSCDR NVHSANALSR RHTRTLLCER CHLQPASVRC  60
IDERVSLCQN CDWTGHGTST TSSSHKRQAI NCYSGCPSAA ELSSIWSFVL EVPSVNDACE  120
KEMGLMSISE TDLTGASSPL ENNNACRRMP ESTEARDVCS RDKSNILVGS SSLSDFGSRP  180
HISDQPVELA NMAVPKFCCP GTKLPGFCDD DDDIYKEFDM DEMDLNLENY EELFGMSLNH  240
SEDLFENGGI DSLFEAKGFD DSVCHSAVAA EGSSVGVVKP MQPACSNGAS ADSVMSTKTE  300
PILCFNSRQA SGVSFSGLTG ESSAGDYQDC GASSMLLMGE PPPWCAPGTE SSIPSSDRNN  360
AVLRYKEKKK TRKFEKRVRY ATRKARADVR RRVKGRFVKV GEAYDYDPLS QTRSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-112	CO-like family protein