PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022970766.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 435aa    MW: 47522.9 Da    PI: 6.5735
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022970766.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.25.6e-134772126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C +++rtG C+yG++C+F+H+
  XP_022970766.1 47 PGEPDCLYYMRTGSCSYGSNCRFNHP 72
                    5789*********************9 PP

2zf-CCCH36.11.1e-1191115327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tGtCkyG++Ck++H++
  XP_022970766.1  91 QPDCEYFLKTGTCKYGGSCKYHHPR 115
                     789********************96 PP

3zf-CCCH37.15.2e-12138160527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++++rtG Ck+G +CkF+H++
  XP_022970766.1 138 SCSYYLRTGSCKFGVSCKFNHPQ 160
                     6********************97 PP

4zf-CCCH39.87.6e-13278303227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+f+ +GtCkyG+ CkF+H++
  XP_022970766.1 278 DQPECRYFMNNGTCKYGSDCKFHHPK 303
                     689*********************96 PP

5zf-CCCH34.82.8e-11321345226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C++++ +G CkyG++CkF H+
  XP_022970766.1 321 GQAVCSYYSMYGLCKYGPSCKFDHP 345
                     7899********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    
MPDNLQVQRN AVPNQSPDVS EALWRLEISD NQDGGDAAES SPYPDRPGEP DCLYYMRTGS  60
CSYGSNCRFN HPVYVAQGAL YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA  120
GPVTFNILGL PMRQEEKSCS YYLRTGSCKF GVSCKFNHPQ PAPVGNMLPQ ARPGALGSAG  180
TPFMPSSGLP YASGIPAWSL PRMQYMPGPC VQGQQSYVPV LVSPPQGAIA AQDWNTYVSN  240
VSPVLPNLGY NSVNLEDSHS NGQLALSTST LTLPDRPDQP ECRYFMNNGT CKYGSDCKFH  300
HPKQRIAQSV MNVLGLPSRP GQAVCSYYSM YGLCKYGPSC KFDHPSATYP YNYGFTLPVL  360
NSSFMKYPSN NYTLSSHDTL PQTVSKSSEW VQKADPPNDK QQTTDTKVDD GTAEEVSSVS  420
CSLSGGSETL QDQSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-108C3H family protein