PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022970423.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 410aa MW: 45530.4 Da PI: 9.9371

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022970423.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.5e-05	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_022970423.1 64 FICEICKKGFQRDQNLQLHRRGH 86 89*******************88 PP
2	zf-C2H2	12.2	0.00055	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_022970423.1 140 WKCEKCSKKYAVQSDWKAHSKIC 162 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MMSEFDALSG LSTISNLIGQ HHPNPNPNPV LVPLKKKRNL PGTPDPDAEV IAMSPKSLMA 60 KNRFICEICK KGFQRDQNLQ LHRRGHNLPW KLRQRTSNEV RKKVYVCPEK SCVHHDSSRA 120 LGDLTGIKKH YSRKHGEKKW KCEKCSKKYA VQSDWKAHSK ICGTKEYKCD CGTLFSRKDS 180 FITHRAXCDA LAEENSRIST VSTLNHHPTF INNFSPSPSS SSLIFRPNFA TTTVNHSNVI 240 SDHGGDDHKP RQLPLSPPPP QLPLWLDPPQ NPNPFFSTAF SDHPPLFLPE NQQSFFSEQL 300 TTTSSYPPPP HMSATALLQK AAQMGPTRTP STPPILFNNT TAVTAYGMNN SAAPTAALSD 360 GRPMMKPIMG GAKEEIGAQN LTRDFLGVGN QVVHLTPAGS NQYSDQSRRH

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MMSEFDALSG LSTISNLIGQ HHPNPNPNPV LVPLKKKRNL PGTPDPDAEV IAMSPKSLMA  60
KNRFICEICK KGFQRDQNLQ LHRRGHNLPW KLRQRTSNEV RKKVYVCPEK SCVHHDSSRA  120
LGDLTGIKKH YSRKHGEKKW KCEKCSKKYA VQSDWKAHSK ICGTKEYKCD CGTLFSRKDS  180
FITHRAXCDA LAEENSRIST VSTLNHHPTF INNFSPSPSS SSLIFRPNFA TTTVNHSNVI  240
SDHGGDDHKP RQLPLSPPPP QLPLWLDPPQ NPNPFFSTAF SDHPPLFLPE NQQSFFSEQL  300
TTTSSYPPPP HMSATALLQK AAQMGPTRTP STPPILFNNT TAVTAYGMNN SAAPTAALSD  360
GRPMMKPIMG GAKEEIGAQN LTRDFLGVGN QVVHLTPAGS NQYSDQSRRH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	103	KLRQRTSNEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	3e-95	C2H2 family protein