PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022970380.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 428aa MW: 48258.9 Da PI: 5.6679

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022970380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5.2e-17	126	172	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l ++vkq+G + W+ Ia+++ gR +kqc++rw+++l XP_022970380.1 126 KGQWTEEEDRKLTRLVKQYGVRKWAQIAEKLE-GRAGKQCRERWHNHL 172 799***************************.***********97 PP
2	Myb_DNA-binding	48.7	1.8e-15	178	220	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++eE+ +lv+ +++ G++ W+ Ia+ ++ gRt++ +k++w+ XP_022970380.1 178 KESWSEEEEMILVETHARVGNR-WAEIAKSIP-GRTENAIKNHWN 220 578*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MQSNAPPSGP PLAAIDRFLY SHNVNGNCFE NGLMGGGLSP ESCGGEWFET DGRLRVEEAL 60 RFQLELELEE LEEEEEEFEE MYGWGRRKEG KCEMGLKEAM VSPNHEGKIC SKLKKLKKPS 120 SAILIKGQWT EEEDRKLTRL VKQYGVRKWA QIAEKLEGRA GKQCRERWHN HLRPDIKKES 180 WSEEEEMILV ETHARVGNRW AEIAKSIPGR TENAIKNHWN ATKRRQNSRR KNKRPNSQNG 240 KPHSSILQDY IKSKFNRTAV QATSSVMSAV SNDPSSHFNH FFSESSDSTS NLSSAIISSP 300 MYDDELLFMQ NFFSNSGGLL PSVDDGASMV AHNQSVAEFG SVDSEPKVEN GKMISGSNMV 360 KSSHLYSDMY MSYLLNGTMN SGSGDGEIQN TVEMAELQVA AGEGQWENSQ EGKREMDLME 420 MLSFHCYS

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MQSNAPPSGP PLAAIDRFLY SHNVNGNCFE NGLMGGGLSP ESCGGEWFET DGRLRVEEAL  60
RFQLELELEE LEEEEEEFEE MYGWGRRKEG KCEMGLKEAM VSPNHEGKIC SKLKKLKKPS  120
SAILIKGQWT EEEDRKLTRL VKQYGVRKWA QIAEKLEGRA GKQCRERWHN HLRPDIKKES  180
WSEEEEMILV ETHARVGNRW AEIAKSIPGR TENAIKNHWN ATKRRQNSRR KNKRPNSQNG  240
KPHSSILQDY IKSKFNRTAV QATSSVMSAV SNDPSSHFNH FFSESSDSTS NLSSAIISSP  300
MYDDELLFMQ NFFSNSGGLL PSVDDGASMV AHNQSVAEFG SVDSEPKVEN GKMISGSNMV  360
KSSHLYSDMY MSYLLNGTMN SGSGDGEIQN TVEMAELQVA AGEGQWENSQ EGKREMDLME  420
MLSFHCYS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	234	KRRQNSRRKNKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	5e-63	MYB family protein