PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022969377.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 506aa MW: 55568.7 Da PI: 8.0737 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.5 | 7.2e-11 | 149 | 173 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_022969377.1 149 GEKDCAHYMLTRTCKFGDSCKFDHP 173 7889********************8 PP | |||||||
2 | zf-CCCH | 36 | 1.2e-11 | 201 | 226 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++t Ck+G+rCkF+H++ XP_022969377.1 201 GEPDCPYFLKTQRCKFGSRCKFNHPK 226 5799********************96 PP | |||||||
3 | zf-CCCH | 29.5 | 1.3e-09 | 248 | 272 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f+ +tG Ck+ +CkF+H++ XP_022969377.1 248 EPLCAFYVKTGNCKFRVNCKFHHPK 272 79*********************96 PP | |||||||
4 | zf-CCCH | 34 | 5e-11 | 329 | 350 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+++tG CkyG +C+++H+ XP_022969377.1 329 DCPFYLKTGSCKYGTTCRYSHP 350 6********************9 PP | |||||||
5 | zf-CCCH | 41 | 3.2e-13 | 405 | 428 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG Ck+G+rCkF+H+ XP_022969377.1 405 QIECDYYMKTGDCKFGERCKFHHP 428 568********************8 PP | |||||||
6 | zf-CCCH | 40.5 | 4.6e-13 | 457 | 479 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tGtCkyG++CkF H+p XP_022969377.1 457 ICPYYLKTGTCKYGSTCKFDHPP 479 6********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence |
MANQLHGYSS VYGAGPATST ATATATATAT TPLPAAYSSS RSLSNIVSGR YLVSDSLASG 60 LSIKHSFIDR GTTMYSTQNE ALRLSAADIV PRTSHSVSQR SSDVLYDQTV LGSYNTLGQS 120 EAWYTSNSLA KRPRFESTSN LHVYPQRPGE KDCAHYMLTR TCKFGDSCKF DHPIWVPEGG 180 IPDWKEVPQI TSSEDLPERL GEPDCPYFLK TQRCKFGSRC KFNHPKDTSE SVGAEKSDVS 240 SLPERPSEPL CAFYVKTGNC KFRVNCKFHH PKDIQILSGE VNGNSEQTLI EANTEGRIGD 300 FKLVKPPVSF SPALIHNSKG LPIRPGEMDC PFYLKTGSCK YGTTCRYSHP DRNAINPSTP 360 AMVSAANMNI GISNPSNAIY QAVDPRLIQP LLGSSSSIYP RRPGQIECDY YMKTGDCKFG 420 ERCKFHHPID RSAPMQASQH NVKLTLAGLP RREDAIICPY YLKTGTCKYG STCKFDHPPP 480 GEVMAMVAVQ LVPGKEGEER IDEPTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | C3H family protein |