PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022969108.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 411aa MW: 45016 Da PI: 5.483

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022969108.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17	1.2e-05	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ lC +C + H+ H++ XP_022969108.1 4 MCDFCGQQRSFVYCRSDAAALCLSCDRNVHSAnalsrrHSR 44 6*****************************65677777766 PP
2	CCT	62.3	1.5e-21	354	397	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+k RkFeKk+rY+sRK++A++R RvKGrFvk+ XP_022969108.1 354 RSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAG 397 889**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MGYMCDFCGQ QRSFVYCRSD AAALCLSCDR NVHSANALSR RHSRTLLCDR CHSQAAFVRC 60 PEENISLCQN CDYMGHSSSA SISSRKRQPI NCYSDCPTAA ELSSIWSFVL DLPSGSDACE 120 QELGLMSIAE NSAVNAWGPD DKAGQNVSGV DETNEFPSGD KSIWFASSSA PQYLSKPHIM 180 DQPITTGATS PKLHYPGTKG PEFDIDDDFY ESLNMDEDLN IENYEELFGV SLSYSEELLE 240 NGGIDSLFRI KSLAAAKSGC AGATDAKGPS GLANNMMQPA SSNAASADSV MSAKTDPILC 300 YNNKQEHSSR SFSGMTGESS AGEHQDCGAS SMLLMGEPPW CSMATESSFQ SSNRSDAVMR 360 YKEKKKARKF EKKVRYASRK VRADTRRRVK GRFVKAGEAY DYDPMSQTRS Y

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MGYMCDFCGQ QRSFVYCRSD AAALCLSCDR NVHSANALSR RHSRTLLCDR CHSQAAFVRC  60
PEENISLCQN CDYMGHSSSA SISSRKRQPI NCYSDCPTAA ELSSIWSFVL DLPSGSDACE  120
QELGLMSIAE NSAVNAWGPD DKAGQNVSGV DETNEFPSGD KSIWFASSSA PQYLSKPHIM  180
DQPITTGATS PKLHYPGTKG PEFDIDDDFY ESLNMDEDLN IENYEELFGV SLSYSEELLE  240
NGGIDSLFRI KSLAAAKSGC AGATDAKGPS GLANNMMQPA SSNAASADSV MSAKTDPILC  300
YNNKQEHSSR SFSGMTGESS AGEHQDCGAS SMLLMGEPPW CSMATESSFQ SSNRSDAVMR  360
YKEKKKARKF EKKVRYASRK VRADTRRRVK GRFVKAGEAY DYDPMSQTRS Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-126	CO-like family protein