PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022968493.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 401aa MW: 45366 Da PI: 6.2901

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022968493.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.2	8.1e-09	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C H+ H++v XP_022968493.1 17 ARACDSCISKRARWYCAADDAFLCQACDALVHSAnslarrHERV 60 578**************************999657788888876 PP
2	CCT	67.2	4.4e-23	346	389	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ XP_022968493.1 346 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRS 389 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MMTRKSVEKT AEGGKTARAC DSCISKRARW YCAADDAFLC QACDALVHSA NSLARRHERV 60 RLQTASFRPS SDKSSAASWH QGFTRKPRSP RMGKAALARK PSPQVPEVNA KEETEDQEQF 120 FLHRVPVLGF DSNVGDLASF VGEKENSNGY LSYDMDPAEF AADVESLLGN SHTECFDMEE 180 LGLGASQDDW TTKDDSSFNS CEVIKIEPDE IEELTPMMLG VETDPMREPF DLNFMDFGDN 240 PSCDKEEKTI VEVMALAKNR EFEVEKETKI ARNKKKVSLS LDSEAVIIAW GSRGTPWTSG 300 ERPNVDLDYY WPDYMGMCES GHYYQAYGEV GGGIRRQAAA GVEGEREARV SRYREKRRTR 360 LFAKKIRYEV RKLNAEKRPR MKGRFVKRSS CFAPPPFPLF N

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MMTRKSVEKT AEGGKTARAC DSCISKRARW YCAADDAFLC QACDALVHSA NSLARRHERV  60
RLQTASFRPS SDKSSAASWH QGFTRKPRSP RMGKAALARK PSPQVPEVNA KEETEDQEQF  120
FLHRVPVLGF DSNVGDLASF VGEKENSNGY LSYDMDPAEF AADVESLLGN SHTECFDMEE  180
LGLGASQDDW TTKDDSSFNS CEVIKIEPDE IEELTPMMLG VETDPMREPF DLNFMDFGDN  240
PSCDKEEKTI VEVMALAKNR EFEVEKETKI ARNKKKVSLS LDSEAVIIAW GSRGTPWTSG  300
ERPNVDLDYY WPDYMGMCES GHYYQAYGEV GGGIRRQAAA GVEGEREARV SRYREKRRTR  360
LFAKKIRYEV RKLNAEKRPR MKGRFVKRSS CFAPPPFPLF N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	357	373	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	7e-80	CO-like family protein