PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022968413.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 783aa MW: 87106.1 Da PI: 5.7505 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.4 | 1.9e-21 | 87 | 142 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++eLe +F+++++p+ ++r eL+++lgL+ +qVk+WFqNrR+++k XP_022968413.1 87 RKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLESKQVKFWFQNRRTQMK 142 7999*************************************************999 PP | |||||||
2 | START | 166.2 | 2.4e-52 | 297 | 517 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la++a++elvk a+ + p+W +s+ e +n de+ ++f++s + ++ea r++++v+ +++ l e+l+d + +W e+++ +a+t+ XP_022968413.1 297 LALAAMDELVKVAQIDTPLWIRSRdssgkETLNFDEYSRTFPSSAAmkhtnWTTEATRDTTMVIINSMALIETLMDAN-RWAEMFPcliaRATTI 390 6899***********************9999**********99888*99999**************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 +vis+g g lqlm ael +lsplvp R f+R+++q+ +g w++vdvS+ + ++ + +++lpSg+++++++ng skvtwveh+ XP_022968413.1 391 DVISNGmggtrnGSLQLMHAELRVLSPLVPvRTLKFLRFCKQHADGLWAVVDVSLGEGADAD---MFFSCRRLPSGCIVQDMPNGFSKVTWVEHT 482 ************************************************************87...5***************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqce 205 ++++ ++h+l+r++++ g+ +g ++w+atlqrqc XP_022968413.1 483 EYDETVVHQLYRQIISWGIGFGSQRWLATLQRQCD 517 *********************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 783 aa Download sequence |
MPNGAIADPS FLAFPIPCSL PNSSEFSNSI GKMDGYREAC LLGDSFDPNG VVRMREDEYD 60 SRSGSDNIDG AVSGDDQDAN NEQRRKRKKY HRHTPHQIQE LEIFFKECPH PDDKQRSELS 120 RRLGLESKQV KFWFQNRRTQ MKTQIERHEN AILKHENDKL RAENSVMKDA ISNPTCNTCG 180 GPSIPVHLSF EEHQLRIDNA RLRDELHRLY TVTNKFLGWP VLPFVNHSSS VSSDSCLELS 240 VGRNGMGNLS NISDPMPMGL NLGNGLFNGD PVMPISKSQM GMPGNDIPID RTIYVDLALA 300 AMDELVKVAQ IDTPLWIRSR DSSGKETLNF DEYSRTFPSS AAMKHTNWTT EATRDTTMVI 360 INSMALIETL MDANRWAEMF PCLIARATTI DVISNGMGGT RNGSLQLMHA ELRVLSPLVP 420 VRTLKFLRFC KQHADGLWAV VDVSLGEGAD ADMFFSCRRL PSGCIVQDMP NGFSKVTWVE 480 HTEYDETVVH QLYRQIISWG IGFGSQRWLA TLQRQCDCLA ILMSSTEDPA GISPHGRRSM 540 LKLSQRMVDN FCSGICTSTL HKWDKLVVGN ISEDVKMMAR NSINDPGEPP GIVLSASTSV 600 WMPVTQQRLF AFLQDECLRS EWDILSNGRP MIEMLCISKG QGLDNRVSLL RANPMNANEN 660 TMLILQESWT DISGSLVVYA PVDTASVNLV MRGEDSAYVS LLPSGFAILP DGPSNYACTN 720 NDKDGSIMSD INSGYASGCL LTVAFQILVN NLPTAKLTVE SVETVNNLIS CTIQKIKVAL 780 RVL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 89 | RKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |