PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022968175.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 407aa MW: 45780.4 Da PI: 5.9356

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022968175.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.3	5.1e-15	82	141	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ ++++lg ++ +e Aa+ ++ a++k++g XP_022968175.1 82 SIYRGVTRHRWTGRFEAHLWDkSSWNSiqnKKgRQVYLGAYDNEEAAARTYDLAALKYWG 141 57*****************777788866447***********************98 PP
2	AP2	52.9	9.1e-17	184	235	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g XP_022968175.1 184 SKYRGVARHHYNGRWEARIGRvF---G-SKYLYLGTYNTQEEAAAAYDMAAIEYRG 235 89**************99966...3.5***********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MSISPSASSC SSSSSSCVGS DSAINIKKKK KNLSAPLRPH SDKARIKRRR RNQDESKREI 60 HNNNSSGINN NNNNASSTRR SSIYRGVTRH RWTGRFEAHL WDKSSWNSIQ NKKGRQVYLG 120 AYDNEEAAAR TYDLAALKYW GPETTLNFPA ESYTNEMEEM RKVTKEEYLA SLRRRSSGFS 180 RGVSKYRGVA RHHYNGRWEA RIGRVFGSKY LYLGTYNTQE EAAAAYDMAA IEYRGPNAVT 240 NFDISNYIGR RLETKSSVFE AAEQPKEEPN DSPVSSEGEV VYQPEEQQTK SWPSLQFSTM 300 LPSIENSPSM GVMGDDHDLH WSFLDTGFVE VPDLPLEKTS ELADLYFDEI GFEDDIGLMF 360 ETSIEGGDSK EDLNVGKMEM NNAPSPSSSS IITNSVSCEK DEIVGFC

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MSISPSASSC SSSSSSCVGS DSAINIKKKK KNLSAPLRPH SDKARIKRRR RNQDESKREI  60
HNNNSSGINN NNNNASSTRR SSIYRGVTRH RWTGRFEAHL WDKSSWNSIQ NKKGRQVYLG  120
AYDNEEAAAR TYDLAALKYW GPETTLNFPA ESYTNEMEEM RKVTKEEYLA SLRRRSSGFS  180
RGVSKYRGVA RHHYNGRWEA RIGRVFGSKY LYLGTYNTQE EAAAAYDMAA IEYRGPNAVT  240
NFDISNYIGR RLETKSSVFE AAEQPKEEPN DSPVSSEGEV VYQPEEQQTK SWPSLQFSTM  300
LPSIENSPSM GVMGDDHDLH WSFLDTGFVE VPDLPLEKTS ELADLYFDEI GFEDDIGLMF  360
ETSIEGGDSK EDLNVGKMEM NNAPSPSSSS IITNSVSCEK DEIVGFC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	50	KKKKKNLSAPLRPHSDKARIKRRR
2	28	51	KKKKKNLSAPLRPHSDKARIKRRR
3	29	52	KKKKKNLSAPLRPHSDKARIKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-96	AP2 family protein