PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022968079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 341aa MW: 38579.5 Da PI: 7.1514 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.5 | 2.3e-20 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr +n+ rq tf+kR++gi+KKA+ELS+LCd+++ +++fs+tgk XP_022968079.1 9 KRLDNTNGRQATFAKRKHGIIKKANELSILCDIDIILLMFSPTGK 53 68899**************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence |
MGRVKLKIKR LDNTNGRQAT FAKRKHGIIK KANELSILCD IDIILLMFSP TGKPSLCSGK 60 RSIEEVIAKF AQQTPQERAK RKLESLEALR KTFKKLDHDV NIQDFLGTSS QTIEDLAGQA 120 KFLRTQLSEV HQRLSFWGNP EKINNVDHLA QMEDSLRESL NQVRVHKENL QKHPPVPLEF 180 ANQMQDGMHL PFDMSVEQQL QQLQHYSWIP SDAQNIVLHD DPNFAPHRDV ECSASSSFAS 240 YPGYFGTGRS PEISNSGHEN GVLPELTRTE PLRPQLGGQN SYMSYNVNFF NDPRFQPAAE 300 MKLPVNPVDY RVNGNYDTAQ LNWASSSGPC AVSLLDDHLF P |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 1e-106 | M-type_MADS family protein |