PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022968079.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family M-type_MADS
Protein Properties Length: 341aa    MW: 38579.5 Da    PI: 7.1514
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022968079.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.52.3e-20953145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    kr +n+  rq tf+kR++gi+KKA+ELS+LCd+++ +++fs+tgk
  XP_022968079.1  9 KRLDNTNGRQATFAKRKHGIIKKANELSILCDIDIILLMFSPTGK 53
                    68899**************************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MGRVKLKIKR LDNTNGRQAT FAKRKHGIIK KANELSILCD IDIILLMFSP TGKPSLCSGK  60
RSIEEVIAKF AQQTPQERAK RKLESLEALR KTFKKLDHDV NIQDFLGTSS QTIEDLAGQA  120
KFLRTQLSEV HQRLSFWGNP EKINNVDHLA QMEDSLRESL NQVRVHKENL QKHPPVPLEF  180
ANQMQDGMHL PFDMSVEQQL QQLQHYSWIP SDAQNIVLHD DPNFAPHRDV ECSASSSFAS  240
YPGYFGTGRS PEISNSGHEN GVLPELTRTE PLRPQLGGQN SYMSYNVNFF NDPRFQPAAE  300
MKLPVNPVDY RVNGNYDTAQ LNWASSSGPC AVSLLDDHLF P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-106M-type_MADS family protein