PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022967901.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 303aa MW: 32205.3 Da PI: 9.0645 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25 | 3.2e-08 | 102 | 127 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f C++Gd+C+FaHg+ XP_022967901.1 102 KTRLCNKFNSAEGCRFGDKCHFAHGE 127 8***********************96 PP | |||||||
2 | zf-CCCH | 30.6 | 5.8e-10 | 270 | 295 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +fa+ GtC + +rC+FaHg+ XP_022967901.1 270 FKTKLCANFAK-GTCTFRERCHFAHGE 295 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence |
MDPDGVHKRE RAETALNGNG AFKKSKPEMD SLSTGLGSKS RPCTKFFSTS GCPFGEGCHF 60 AHYVPGGFKA ISQMNSPAIL TGIRNPVGPP PFPDGVSPPA VKTRLCNKFN SAEGCRFGDK 120 CHFAHGEWDL GRPNPPPEHG GMGGPLAQQP RMGGGWNVPP PQPNHGPAAS FGASATAKIS 180 VDASLAGPII GKNGVNSKNI CRMTGARLSI KDHESDSSLK NIELEGTFDQ INLASSMVRE 240 LIANMGTASA NDAMRQQQHS QHHSGSANNF KTKLCANFAK GTCTFRERCH FAHGESELRK 300 PGM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 5e-58 | C3H family protein |