PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022967865.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 298aa MW: 31181.3 Da PI: 9.5835 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.5 | 3.5e-06 | 35 | 58 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H XP_022967865.1 35 KSKPCTKFFSTAGCPFGESCHFLH 58 6789******************** PP | |||||||
2 | zf-CCCH | 25.8 | 1.9e-08 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ f Ck+Gd+C+FaHg+ XP_022967865.1 101 KTRMCNKFNSAEGCKFGDKCNFAHGE 126 899*********************96 PP | |||||||
3 | zf-CCCH | 38.2 | 2.4e-12 | 265 | 289 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++fa+ G C +G+rC+FaHg XP_022967865.1 265 YKTKLCDNFAK-GSCTFGERCHFAHG 289 9**********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence |
MDMRKRGRPE AAFNSNGSFK KHKQELESLS TVGGKSKPCT KFFSTAGCPF GESCHFLHYV 60 PGGYNAVAQM MNLAPVGSQP SRNMAAPPVS NGGSSAPSQI KTRMCNKFNS AEGCKFGDKC 120 NFAHGEWELG RPTPPSHDNP RGMGGGHMVG RMGGRMDLPP PGPAASFGAS ATAKISIDAS 180 LAGAIIGKGG INSKQICRQT GAKLSIRDNE SDPNLRNIEL EGTFEQINEA SAMVRELIIT 240 VSMSGPGKAH GAMGGGGPAP SGSNYKTKLC DNFAKGSCTF GERCHFAHGA AELRKSGV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-52 | C3H family protein |