PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022967287.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 337aa MW: 36878.5 Da PI: 7.7265

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022967287.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.2e-08	75	99	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_022967287.1 75 FKTKLCCKFRA-GTCPYITNCNFAHS 99 69*******.***********8 PP
2	zf-CCCH	18.7	3e-06	149	174	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_022967287.1 149 YKGRHCKKFYTEEGCPYGDSCTFLHD 174 78888********************7 PP
3	zf-CCCH	42.4	1.2e-13	218	243	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_022967287.1 218 WKTRICNKWELTGYCPFGSKCHFAHG 243 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MSSENWPGEV WATEEEYRAW NNGGGDGSID TPSNSSYDQR QSQSRSGSEP PNKKSRSSQD 60 VTSSNRSKAI GKMFFKTKLC CKFRAGTCPY ITNCNFAHSI EELRRPPHNW QQEIVAAHEE 120 EKVFSEPREE FQIPSLGTSN FGSESQRSYK GRHCKKFYTE EGCPYGDSCT FLHDEQSKNR 180 ESVAISLGPG GYSGGGGGGG GGGGGGSGNG SNSKPSNWKT RICNKWELTG YCPFGSKCHF 240 AHGAAELHRY GGGLMETETR DSSSAPPDLK QGVLPKAPGD TLVASVPSVP HSDVYHIVVP 300 SQRSTIVIQR SGQRPHQKWK GPDKISRIYG DWIDDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-123	C3H family protein