PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022967284.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 351aa    MW: 38305.1 Da    PI: 7.5182
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022967284.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-0889113126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f++ GtC+y  +C+FaH+
  XP_022967284.1  89 FKTKLCCKFRA-GTCPYITNCNFAHS 113
                     69*********.*************8 PP

2zf-CCCH18.73.2e-06163188126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yGd+C+F H+
  XP_022967284.1 163 YKGRHCKKFYTEEGCPYGDSCTFLHD 188
                     78888********************7 PP

3zf-CCCH42.31.2e-13232257126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_022967284.1 232 WKTRICNKWELTGYCPFGSKCHFAHG 257
                     8************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MDYSGGNVVH VIPGMSSENW PGEVWATEEE YRAWNNGGGD GSIDTPSNSS YDQRQSQSRS  60
GSEPPNKKSR SSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF AHSIEELRRP  120
PHNWQQEIVA AHEEEKVFSE PREEFQIPSL GTSNFGSESQ RSYKGRHCKK FYTEEGCPYG  180
DSCTFLHDEQ SKNRESVAIS LGPGGYSGGG GGGGGGGGGG SGNGSNSKPS NWKTRICNKW  240
ELTGYCPFGS KCHFAHGAAE LHRYGGGLME TETRDSSSAP PDLKQGVLPK APGDTLVASV  300
PSVPHSDVYH IVVPSQRSTI VIQRSGQRPH QKWKGPDKIS RIYGDWIDDI E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-127C3H family protein