PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022966408.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 294aa MW: 31103.4 Da PI: 9.3988

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022966408.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.4e-07	34	58	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H XP_022966408.1 34 KSKPCTKFFSTAGCPFGESCHFLHH 58 7789********************6 PP
2	zf-CCCH	27.5	5.3e-09	101	126	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ + Ck+Gd+C+FaHg+ XP_022966408.1 101 KTRMCNKYNTAEGCKFGDKCNFAHGE 126 89**********************96 PP
3	zf-CCCH	35.2	2.1e-11	261	285	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C++fa+ G C +G+rC+FaHg XP_022966408.1 261 YKTKMCDNFAK-GSCTFGERCHFAHG 285 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MDMRKRRPEP AFNSNGTFKK HKQELEPLST VGSKSKPCTK FFSTAGCPFG ESCHFLHHVP 60 GGYNVVAQMM NLPPVGSHPS RNMAAPPLVT NGGSSAPSQV KTRMCNKYNT AEGCKFGDKC 120 NFAHGEWELG RPPSHDNPHS MGGHMVGRMG GRMDLPQPGP AASFGASATA KISIDASLAG 180 AIIGKGGINS KQICRQTGAK LSIRDHESDT NLRNIELEGT FEQINEASAM VRELIITVSM 240 AGPGKAPGAM GGGPAPSGSN YKTKMCDNFA KGSCTFGERC HFAHGAAELR KSGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	3e-87	C3H family protein